PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

Author:

Agrawal Singh Shuchi123ORCID,Lerdrup Mads13ORCID,Gomes Ana-Luisa R13,van de Werken Harmen JG456ORCID,Vilstrup Johansen Jens137,Andersson Robin137,Sandelin Albin137ORCID,Helin Kristian8910ORCID,Hansen Klaus13ORCID

Affiliation:

1. Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark

2. Department of Hematology, Cambridge Institute for Medical Research and Welcome Trust/MRC Stem Cell Institute, University of Cambridge, Cambridge, United Kingdom

3. Centre for Epigenetics, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark

4. Department of Cell Biology, University Medical Center, Rotterdam, Netherlands

5. Cancer Computational Biology Center, University Medical Center, Rotterdam, Netherlands

6. Department of Urology, University Medical Center, Rotterdam, Netherlands

7. Department of Biology, The Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark

8. The Novo Nordisk Center for Stem Cell Biology, Faculty of Health and Medical Sciences University of Copenhagen, Copenhagen, Denmark

9. Cell Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States

10. Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, United States

Abstract

The PLZF transcription factor is essential for osteogenic differentiation of hMSCs; however, its regulation and molecular function during this process is not fully understood. Here, we revealed that the ZBTB16 locus encoding PLZF, is repressed by Polycomb (PcG) and H3K27me3 in naive hMSCs. At the pre-osteoblast stage of differentiation, the locus lost PcG binding and H3K27me3, gained JMJD3 recruitment, and H3K27ac resulting in high expression of PLZF. Subsequently, PLZF was recruited to osteogenic enhancers, influencing H3K27 acetylation and expression of nearby genes important for osteogenic function. Furthermore, we identified a latent enhancer within the ZBTB16/PLZF locus itself that became active, gained PLZF, p300 and Mediator binding and looped to the promoter of the nicotinamide N-methyltransferase (NNMT) gene. The increased expression of NNMT correlated with a decline in SAM levels, which is dependent on PLZF and is required for osteogenic differentiation.

Funder

Forskerakademiet

Novo Nordisk

Danish National Research Foundation

Memorial Sloan-Kettering Cancer Center

Lundbeckfonden

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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