Author:
Wen Chang-Yu,Lian Ju-Yu,Peng Wei-Xiong,Wang Zheng-Feng,Yang Zhi-Gang,Cao Hong-Lin
Abstract
AbstractObjectivesErythrophleumis a genus in the Fabaceae family. The genus contains only about 10 species, and it is best known for its hardwood and medical properties worldwide.Erythrophleum fordiiOliv. is the only species of this genus distributed in China. It has superior wood and can be used in folk medicine, which leads to its overexploitation in the wild. For its effective conservation and elucidation of the distinctive genetic traits of wood formation and medical components, we present its first genome assembly.Data descriptionThis work generated ~ 160.8 Gb raw Nanopore whole genome sequencing (WGS) long reads, ~ 126.0 Gb raw MGI WGS short reads and ~ 29.0 Gb raw RNA-seq reads usingE. fordiileaf tissues. Thede novoassembly contained 864,825,911 bp in theE. fordiigenome, with 59 contigs and a contig N50 of 30,830,834 bp. Benchmarking Universal Single-Copy Orthologs (BUSCO) revealed 98.7% completeness of the assembly. The assembly contained 471,006,885 bp (54.4%) repetitive sequences and 28,761 genes that coded for 33,803 proteins. The protein sequences were functionally annotated against multiple databases, facilitating comparative genomic analysis.
Publisher
Springer Science and Business Media LLC
Subject
Health Informatics,Genetics
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