Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm-Reference-Cited by-同舟云学术

Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm

Published:2024-09-09 Issue:1 Volume:25 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Ding Qian,Yang Wenyi,Xue Guangfu,Liu Hongxin,Cai Yideng,Que Jinhao,Jin Xiyun,Luo Meng,Pang Fenglan,Yang Yuexin,Lin Yi,Liu Yusong,Sun Haoxiu,Tan Renjie,Wang Pingping,Xu Zhaochun,Jiang Qinghua

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1186/s13059-024-03385-6.pdf

Reference128 articles.

1. Armingol E, Officer A, Harismendy O, Lewis NE. Deciphering cell-cell interactions and communication from gene expression. Nat Rev Genet. 2021;22:71–88.

2. Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008;9:559.

3. Ruan J, Zhang W: Identifying network communities with a high resolution. Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 2008, 77:016104.

4. Bader GD, Hogue CW. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics. 2003;4:2.

5. Hwang W, Cho Y-R, Zhang A, Ramanathan M. A novel functional module detection algorithm for protein-protein interaction networks. Algorithms for Molecular Biology. 2006;1:24.

Cited by 1 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm;Genome Biology;2024-09-09