simpleNomo: A Python Package of Making Nomograms for Visualizable Calculation of Logistic Regression Models

Author:

Hong Haoyang12,Hong Shenda1

Affiliation:

1. National Institute of Health Data Science, Peking University, Beijing, China.

2. School of Data Science, Chinese University of Hong Kong, Shenzhen, China.

Abstract

Background Logistic regression models are widely used in clinical prediction, but their application in resource-poor settings or areas without internet access can be challenging. Nomograms can serve as a useful visualization tool to speed up the calculation procedure, but existing nomogram generators often require the input of raw data, inhibiting the transformation of established logistic regression models that only provide coefficients. Developing a tool that can generate nomograms directly from logistic regression coefficients would greatly increase usability and facilitate the translation of research findings into patient care. Methods We designed and developed simpleNomo, an open-source Python toolbox that enables the construction of nomograms for logistic regression models. Uniquely, simpleNomo allows for the creation of nomograms using only the coefficients of the model. Further, we also devoloped an online website for nomogram generation. Results simpleNomo properly maintains the predictive ability of the original logistic regression model and easy to follow. simpleNomo is compatible with Python 3 and can be installed through Python Package Index (PyPI) or https://github.com/Hhy096/nomogram Conclusion This paper presents simpleNomo, an open-source Python toolbox for generating nomograms for logistic regression models. It facilitates the process of transferring established logistic regression models to nomograms and can further convert more existing works into practical use.

Funder

National Natural Science Foundation of China

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference20 articles.

1. A review of the logistic regression model with emphasis on medical research;Boateng EY;J Data Anal Inf Process,2019

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3. Kattan MW Marasco J. What is a real nomogram? Semin Oncol. 2010;37(1):23–26.

4. Evesham HA. The history and development of nomography. London: Docent Press; 2010.

5. A.D.H. The nomogram: The theory and practical construction of computation charts. J. Frank. Inst. 1951;251(6):662.

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