Biosensor-integrated transposon mutagenesis reveals rv0158 as a coordinator of redox homeostasis in Mycobacterium tuberculosis

Author:

Shee Somnath12ORCID,Veetil Reshma T3,Mohanraj Karthikeyan4,Das Mayashree12ORCID,Malhotra Nitish3ORCID,Bandopadhyay Devleena5,Beig Hussain12,Birua Shalini12,Niphadkar Shreyas6,Nagarajan Sathya Narayanan12ORCID,Sinha Vikrant Kumar5,Thakur Chandrani7,Rajmani Raju S2,Chandra Nagasuma7ORCID,Laxman Sunil6ORCID,Singh Mahavir5,Samal Areejit4,Seshasayee Aswin N3,Singh Amit12ORCID

Affiliation:

1. Department of Microbiology and Cell Biology, Indian Institute of Science Bangalore

2. Centre for Infectious Disease Research, Indian Institute of Science Bangalore

3. National Centre for Biological Sciences

4. The Institute of Mathematical Sciences, A CI of Homi Bhabha National Institute

5. Molecular Biophysics Unit, Indian Institute of Science Bangalore

6. Institute for Stem Cell Science and Regenerative Medicine

7. Department of Biochemistry, Indian Institute of Science Bangalore

Abstract

Mycobacterium tuberculosis (Mtb) is evolutionarily equipped to resist exogenous reactive oxygen species (ROS) but shows vulnerability to an increase in endogenous ROS (eROS). Since eROS is an unavoidable consequence of aerobic metabolism, understanding how Mtb manages eROS levels is essential yet needs to be characterized. By combining the Mrx1-roGFP2 redox biosensor with transposon mutagenesis, we identified 368 genes (redoxosome) responsible for maintaining homeostatic levels of eROS in Mtb. Integrating redoxosome with a global network of transcriptional regulators revealed a hypothetical protein (Rv0158) as a critical node managing eROS in Mtb. Disruption of rv0158 (rv0158 KO) impaired growth, redox balance, respiration, and metabolism of Mtb on glucose but not on fatty acids. Importantly, rv0158 KO exhibited enhanced growth on propionate, and the Rv0158 protein directly binds to methylmalonyl-CoA, a key intermediate in propionate catabolism. Metabolite profiling, ChIP-Seq, and gene-expression analyses indicate that Rv0158 manages metabolic neutralization of propionate toxicity by regulating the methylcitrate cycle. Disruption of rv0158 enhanced the sensitivity of Mtb to oxidative stress, nitric oxide, and anti-TB drugs. Lastly, rv0158 KO showed poor survival in macrophages and persistence defect in mice. Our results suggest that Rv0158 is a metabolic integrator for carbon metabolism and redox balance in Mtb.

Funder

Wellcome Trust - DBT India Alliance

Indian Institute of Science

Department of Atomic Energy, Government of India

Department of Biotechnology, Ministry of Science and Technology, India

Infosys Foundation

Department of Science & Technology, Ministry of Science and Technology, India

Ignite Life Science Foundation

Department of Science and Technology, Ministry of Science and Technology, India

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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