Precision RNAi using synthetic shRNAmir target sites

Author:

Hoffmann Thomas12ORCID,Hörmann Alexandra3,Corcokovic Maja3,Zmajkovic Jakub1ORCID,Hinterndorfer Matthias1ORCID,Salkanovic Jasko3,Spreitzer Fiona3,Köferle Anna3ORCID,Gitschtaler Katrin3,Popa Alexandra3,Oberndorfer Sarah3,Andersch Florian1,Schaefer Markus1,Fellner Michaela1,Budano Nicole3,Ruppert Jan G3,Chetta Paolo3,Wurm Melanie3,Zuber Johannes14ORCID,Neumüller Ralph A3ORCID

Affiliation:

1. Research Institute of Molecular Pathology (IMP), Campus-Vienna-Biocenter 1

2. Vienna BioCenter PhD Program, Doctoral School of the University at Vienna and Medical University of Vienna, Vienna BioCenter (VBC)

3. Boehringer Ingelheim RCV GmbH & Co KG, Doktor-Boehringer-Gasse

4. Medical University of Vienna, Vienna BioCenter

Abstract

Loss-of-function genetic tools are widely applied for validating therapeutic targets, but their utility remains limited by incomplete on- and uncontrolled off-target effects. We describe artificial RNA interference (ARTi) based on synthetic, ultra-potent, off-target-free shRNAs that enable efficient and inducible suppression of any gene upon introduction of a synthetic target sequence into non-coding transcript regions. ARTi establishes a scalable loss-of-function tool with full control over on- and off-target effects.

Funder

Swiss National Science Foundation

Austrian Research Promotion Agency

Marie Skłodowska-Curie Actions

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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