A germline heterozygous dominant negativeIKZF2variant causing syndromic primary immune regulatory disorder and ICHAD

Author:

Lu Henry Y.ORCID,Vaseghi-Shanjani MaryamORCID,Lam Avery J.ORCID,Sharma MehulORCID,Mohajeri ArezooORCID,Gillies Jana,Yang Gui Xiang,Lin Susan,Fu Maggie P.ORCID,Salman AreeshaORCID,Rahmanian RonakORCID,Armstrong LinleaORCID,Halparin Jessica,Yang Connie L.ORCID,Chilvers MarkORCID,Henkelman ErikaORCID,Rehmus WingfieldORCID,Morrison Douglas,Setiadi AudiORCID,Mostafavi SaraORCID,Kobor Michael S.ORCID,Kozak Frederick K.ORCID,Biggs Catherine M.ORCID,Karnebeek Clara vanORCID,Hildebrand Kyla J.ORCID,Lehman AnnaORCID,Levings Megan K.ORCID,Turvey Stuart E.

Abstract

AbstractMonogenic defects that impair the control of inflammation and tolerance lead to profound immune dysregulation, including autoimmunity and atopy. Studying these disorders reveals important molecular and cellular factors that regulate human immune homeostasis and identifies potential precision medicine targets. Here, we provide a detailed immunological assessment of a pediatric patient with a recently discovered syndrome causing Immunodysregulation, Craniofacial anomalies, Hearing impairment, Athelia, and Developmental delay (or ICHAD syndrome). The immunodysregulation resulted in autoimmune hemolytic anemia (AIHA) and atopic dermatitis. The patient carried ade novogermline heterozygous c.406+540_574+13477dup;p.Gly136_Ser191dup variant inIKAROS family zinc finger 2(IKZF2), which encodes Helios. This variant led to reduced Helios protein expression and dominant interference of wild-type Helios-mediated repression of theIL2promoter. Multi-parameter flow cytometric analyses of patient peripheral blood mononuclear cells revealed strongly impaired natural killer cell differentiation and function, and increased CD8+T cell activation and cytokine secretion. Strikingly, patient CD4+T cells were hyperactive, produced elevated levels of nearly all T helper (TH) cytokines, and readily proliferated in response to stimulation. Patient regulatory T cells (Tregs) developed normally but aberrantly produced high levels of many THcytokines. Single-cell RNA sequencing revealed largely normal Tregs (albeit mostly memory), but naïve CD4+T cells that were more enriched in genes related to activation, proliferation, metabolism, and THdifferentiation. This work describes the immunological phenotype of one of the first reported cases of germline dominant negative Helios deficiency, expands our understanding of the pathogenesis of AIHA on a single cell level, and provides valuable insights into Helios function in a variety of lymphocyte subsets.

Publisher

Cold Spring Harbor Laboratory

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