CarbDisMut: database on neutral and disease-causing mutations in human carbohydrate-binding proteins

Author:

Shanmugam N R Siva12ORCID,Kulandaisamy A1234ORCID,Veluraja K5,Gromiha M Michael12678ORCID

Affiliation:

1. Department of Biotechnology , Bhupat and Jyoti Mehta School of Biosciences, , Chennai 600036 , India

2. Indian Institute of Technology Madras , Bhupat and Jyoti Mehta School of Biosciences, , Chennai 600036 , India

3. Basic and Translational Research , Department of Cardiology, , Boston, MA 02115 , United States

4. Boston Children’s Hospital , Department of Cardiology, , Boston, MA 02115 , United States

5. PSN College of Engineering and Technology , Melathediyoor, Tirunelveli, Tamil Nadu 627451 , India

6. Department of Computer Science , Tokyo Tech World Research Hub Initiative (WRHI), , 4259 Nagatsutacho, Midori-ku, Yokohama, Kanagawa 226-8501 , Japan

7. Institute of Innovative Research, Tokyo Institute of Technology , Tokyo Tech World Research Hub Initiative (WRHI), , 4259 Nagatsutacho, Midori-ku, Yokohama, Kanagawa 226-8501 , Japan

8. Department of Computer Science, National University of Singapore , 117417 , Singapore

Abstract

Abstract Protein-carbohydrate interactions are involved in several cellular and biological functions. Integrating structure and function of carbohydrate-binding proteins with disease-causing mutations help to understand the molecular basis of diseases. Although databases are available for protein-carbohydrate complexes based on structure, binding affinity and function, no specific database for mutations in human carbohydrate-binding proteins is reported in the literature. We have developed a novel database, CarbDisMut, a comprehensive integrated resource for disease-causing mutations with sequence and structural features. It has 1.17 million disease-associated mutations and 38,636 neutral mutations from 7,187 human carbohydrate-binding proteins. The database is freely available at https://web.iitm.ac.in/bioinfo2/carbdismut. The web-site is implemented using HTML, PHP and JavaScript and supports recent versions of all major browsers, such as Firefox, Chrome and Opera.

Funder

Department of Biotechnology and Indian Institute of Technology Madras

Department of Biotechnology, Government of India

Ministry of Education, India

Publisher

Oxford University Press (OUP)

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