TAPAS: tool for alternative polyadenylation site analysis

Author:

Arefeen Ashraful1ORCID,Liu Juntao2,Xiao Xinshu3,Jiang Tao145

Affiliation:

1. Department of Computer Science and Engineering, University of California, Riverside, CA, USA

2. School of Mathematics, Shandong University, Jinan, Shandong, China

3. Department of Integrative Biology and Physiology, University of California, Los Angeles, CA, USA

4. Institute of Integrative Genome Biology, University of California, Riverside, CA, USA

5. MOE Key Lab of Bioinformatics and Bioinformatics Division, TNLIST/Department of Computer Science and Technology, Tsinghua University, Beijing, China

Funder

National Science Foundation

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference49 articles.

1. Differential expression analysis for sequence count data;Anders;Genome Biol,2010

2. Detecting differential usage of exons from RNA-seq data;Anders;Genome Res,2012

3. 3′-end sequencing for expression quantification (3SEQ) from archival tumor samples;Andrew;PLoS One,2010

4. Genomic Analysis of ADAR1 binding and its involvement in multiple RNA processing pathways;Bahn;Nat. Commun,2015

5. Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements;Barrett;Cell. Mol. Life Sci,2012

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