1. HTSeq - A Python framework to work with high-throughput sequencing data;Bioinformatics,2014
2. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila;Cell,2007
3. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation;Nat. Methods,2009
4. STAR: ultrafast universal RNA-seq aligner;Bioinformatics,2013
5. Full-length transcriptome assembly from RNA-Seq data without a reference genome;Nat. Biotechnol.,2011