SPRINT: an SNP-free toolkit for identifying RNA editing sites

Author:

Zhang Feng12,Lu Yulan3,Yan Sijia45,Xing Qinghe45,Tian Weidong124

Affiliation:

1. State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Fudan University, Shanghai, China

2. Department of Biostatistics and Computational Biology, School of Life Sciences, Fudan University, Shanghai, China

3. The Molecular Genetic Diagnosis Center, Shanghai Key Lab of Birth Defect, Translational Medicine Research Center of Children Development and Diseases, Pediatrics Research Institute, Children’s Hospital of Fudan University, Shanghai, China

4. Children’s Hospital of Fudan University, Shanghai, China

5. Institute of Biomedical Sciences, Fudan University, Shanghai, China

Funder

National Natural Science Foundation of China

Shanghai Municipal Education Commission

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference55 articles.

1. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing;Bahn;Genome Res,2012

2. RNA editing. The long and the short of it;Benne;Nature,1996

3. C-to-U RNA editing: mechanisms leading to genetic diversity;Blanc;J. Biol. Chem,2003

4. Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver;Blanc;Genome Biol,2014

5. Adenosine deamination in human transcripts generates novel microRNA binding sites;Borchert;Hum. Mol. Genet,2009

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