Uncovering two phases of early intercontinental COVID-19 transmission dynamics

Author:

Yang Jing1,Li Juan2,Lai Shengjie3,Ruktanonchai Corrine W34,Xing Weijia2,Carioli Alessandra3,Wang Peihan2,Ruktanonchai Nick W34,Li Ruiyun5,Floyd Jessica R3,Wang Liang1,Bi Yuhai16,Shi Weifeng2,Tatem Andrew J3

Affiliation:

1. CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, China

2. School of Public Health, Shandong First Medical University and Shandong Academy of Medical Sciences, Taian, China

3. WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK

4. Population Health Sciences, Virginia Tech, Blacksburg, VA, USA

5. MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine, Imperial College London, London, UK

6. University of Chinese Academy of Sciences, Beijing, China

Abstract

Abstract Background The COVID-19 pandemic has posed an ongoing global crisis, but how the virus spread across the world remains poorly understood. This is of vital importance for informing current and future pandemic response strategies. Methods We performed two independent analyses, travel network-based epidemiological modelling and Bayesian phylogeographic inference, to investigate the intercontinental spread of COVID-19. Results Both approaches revealed two distinct phases of COVID-19 spread by the end of March 2020. In the first phase, COVID-19 largely circulated in China during mid-to-late January 2020 and was interrupted by containment measures in China. In the second and predominant phase extending from late February to mid-March, unrestricted movements between countries outside of China facilitated intercontinental spread, with Europe as a major source. Phylogenetic analyses also revealed that the dominant strains circulating in the USA were introduced from Europe. However, stringent restrictions on international travel across the world since late March have substantially reduced intercontinental transmission. Conclusions Our analyses highlight that heterogeneities in international travel have shaped the spatiotemporal characteristics of the pandemic. Unrestricted travel caused a large number of COVID-19 exportations from Europe to other continents between late February and mid-March, which facilitated the COVID-19 pandemic. Targeted restrictions on international travel from countries with widespread community transmission, together with improved capacity in testing, genetic sequencing and contact tracing, can inform timely strategies for mitigating and containing ongoing and future waves of COVID-19 pandemic.

Funder

Key Research and Development Project of Shandong Province

National Key Research and Development Programme of China

Chinese Academy of Sciences

National Natural Science Foundation of China

National Science and Technology Major Project of China

Academic Promotion Programme of Shandong First Medical University

Bill and Melinda Gates Foundation

European Union Horizon 2020

National Major Project for Control and Prevention of Infectious Disease in China

Youth Innovation Promotion Association of CAS

Publisher

Oxford University Press (OUP)

Subject

General Medicine

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