The clinical and genetic spectrum of autosomal-recessive TOR1A-related disorders

Author:

Saffari Afshin12,Lau Tracy3ORCID,Tajsharghi Homa4,Karimiani Ehsan Ghayoor56,Kariminejad Ariana7,Efthymiou Stephanie3ORCID,Zifarelli Giovanni8,Sultan Tipu3,Toosi Mehran Beiraghi910,Sedighzadeh Sahar1112,Siu Victoria Mok13,Ortigoza-Escobar Juan Darío14,AlShamsi Aisha M15,Ibrahim Shahnaz16,Al-Sannaa Nouriya Abbas17,Al-Hertani Walla18,Sandra Whalen19ORCID,Tarnopolsky Mark20,Alavi Shahryar3,Li Chumei20,Day-Salvatore Debra-Lynn21,Martínez-González Maria Jesús22,Levandoski Kristin M21,Bedoukian Emma23,Madan-Khetarpal Suneeta24,Idleburg Michaela J24,Menezes Minal Juliet2526,Siddharth Aishwarya18,Platzer Konrad27ORCID,Oppermann Henry27ORCID,Smitka Martin28,Collins Felicity2629,Lek Monkol30,Shahrooei Mohmmad3132,Ghavideldarestani Maryam31,Herman Isabella33343536,Rendu John37ORCID,Faure Julien37,Baker Janice38,Bhambhani Vikas38,Calderwood Laurel3940,Akhondian Javad41,Imannezhad Shima42,Mirzadeh Hanieh Sadat42,Hashemi Narges9,Doosti Mohammad6,Safi Mojtaba6,Ahangari Najmeh43,Torbati Paria Najarzadeh6,Abedini Soheila3,Salpietro Vincenzo3,Gulec Elif Yilmaz44,Eshaghian Safieh45,Ghazavi Mohammadreza46,Pascher Michael T47,Vogel Marina4748,Abicht Angela4749ORCID,Moutton Sébastien50ORCID,Bruel Ange-Line5152,Rieubland Claudine53,Gallati Sabina53,Strom Tim M54,Lochmüller Hanns5556,Mohammadi Mohammad Hasan57,Alvi Javeria Raza58,Zackai Elaine H59,Keena Beth A59,Skraban Cara M59,Berger Seth I60,Andrew Erin H60,Rahimian Elham61,Morrow Michelle M62,Wentzensen Ingrid M62,Millan Francisca62,Henderson Lindsay B62,Dafsari Hormos Salimi636465,Jungbluth Heinz6566,Gomez-Ospina Natalia67,McRae Anne68,Peter Merlene68,Veltra Danai69,Marinakis Nikolaos M69,Sofocleous Christalena69,Ashrafzadeh Farah42,Pehlivan Davut333435,Lemke Johannes R2770ORCID,Melki Judith71,Benezit Audrey72,Bauer Peter8,Weis Denisa73,Lupski James R34357475,Senderek Jan47,Christodoulou John2676ORCID,Chung Wendy K77,Goodchild Rose7879ORCID,Offiah Amaka C80,Moreno-De-Luca Andres81,Suri Mohnish82,Ebrahimi-Fakhari Darius1838485ORCID,Houlden Henry3ORCID,Maroofian Reza3

Affiliation:

1. Department of Neurology, Boston Children's Hospital, Harvard Medical School , Boston, MA , USA

2. Division of Child Neurology and Inherited Metabolic Diseases, Heidelberg University Hospital , Heidelberg , Germany

3. Department of Neuromuscular Diseases, Queen Square Institute of Neurology, University College London , London , UK

4. School of Health Sciences, Division of Biomedicine, University of Skovde , Skovde , Sweden

5. Molecular and Clinical Sciences Institute, St. George's, University of London , Cranmer Terrace, London , UK

6. Department of Medical Genetics, Next Generation Genetic Polyclinic , Mashhad , Iran

7. Kariminejad-Najmabadi Pathology & Genetics Center , Tehran , Iran

8. CENTOGENE GmbH , Am Strande 7, 18055 Rostock , Germany

9. Department of Pediatrics, School of Medicine, Mashhad University of Medical Sciences , Mashhad , Iran

10. Neuroscience Research Center, Mashhad University of Medical Sciences , Mashhad , Iran

11. Department of Biological Sciences, Faculty of Science, Shahid Chamran University of Ahvaz , Ahvaz , Iran

12. KaryoGen , Isfahan , Iran

13. Division of Medical Genetics, Department of Pediatrics, Schulich School of Medicine and Dentistry, Western University , London, ON , Canada

14. Movement Disorders Unit, Pediatric Neurology Department, Institut de Recerca, Hospital Sant Joan de Déu Barcelona , Barcelona , Spain

15. Genetic Division, Pediatrics Department, Tawam Hospital , Al Ain, UAE

16. Department of pediatrics and child Health, Aga Khan University , Karachi , Pakistan

17. Pediatric Services, John Hopkins Aramco Health Care , Dhahran , Saudi Arabia

18. Harvard Medical School, Boston Children's Hospital, Department of Pediatrics, Division of Genetics and Genomics , Boston, MA , USA

19. APHP UF de Génétique Clinique, Centre de Référence des Anomalies du Développement et Syndromes Malformatifs, APHP, Hôpital Armand Trousseau, ERN ITHACA, Sorbonne Université , Paris , France

20. Department of Pediatrics (MT – Neuromuscular and Neurometabolics, CL – Medical Genetics), McMaster Children's Hospital , Hamilton, Ontario , Canada

21. The Department of Medical Genetics and Genomic Medicine at Saint Peter's University Hospital, New Brunswick , NJ , USA

22. Pediatric Neurology Unit, Cruces University Hospital , Barakaldo, Vizcaya , Spain

23. Roberts Individualized Medical Genetics Center, Children's Hospital of Philadelphia , Philadelphia, PA , USA

24. Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh , Pittsburgh, Pennsylvania , USA

25. Department of Anaesthesia, the Children's Hospital at Westmead , Sydney, NSW , Australia

26. Discipline of Child and Adolescent Health, and Specialty of Genomic Medicine, Sydney Medical School, Sydney University , Sydney, NSW , Australia

27. Institute of Human Genetics, University of Leipzig Medical Center , Leipzig , Germany

28. Department of Neuropediatrics, Medical Faculty Carl Gustav Carus, Technical University Dresden , Dresden , Germany

29. Department of Clinical Genetics, Children's Hospital at Westmead , Sydney, NSW , Australia

30. Department of Genetics, Yale School of Medicine , New Haven, Connecticut , USA

31. Medical Laboratory of Dr. Shahrooei , Tehran , Iran

32. Department of Microbiology and Immunology, Clinical and Diagnostic Immunology , KU Leuven, Leuven , Belgium

33. Section of Pediatric Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine , Houston, TX , USA

34. Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, TX , USA

35. Texas Children's Hospital , Houston, TX , USA

36. Division of Pediatric Neuroscience, Boys Town National Research Hospital , Boys Town, NE , USA

37. Univ. Grenoble Alpes, Inserm, U1216, CHU Grenoble Alpes, Grenoble Institut Neurosciences , Grenoble , France

38. Division of Genetics and Genomic Medicine, Children's Hospital and Clinics of Minnesota, Minneapolis , Minnesota , USA

39. Lucile Packard Children's Hospital Stanford , Palo Alto, CA , USA

40. Department of Pediatrics, Division of Medical Genetics, Stanford University School of Medicine , Stanford, CA , USA

41. Pediatric Neurology Department, Ghaem Hospital, Mashhad University of Medical Sciences , Mashhad , Iran

42. Department of Pediatric Neurology, Faculty of Medicine, Mashhad University of Medical Sciences , Mashhad , Iran

43. Innovative medical research centre, Mashhad branch, Islamic Azad University , Mashhad , Iran

44. Istanbul Medeniyet University Medical School, Department of Medical Genetics , Istanbul , Turkey

45. Isfahan Fertility and Infertility Center , Isfahan , Iran

46. Department of Pediatric Neurology, Imam Hossein Children's Hospital, Isfahan University of Medical Sciences , Isfahan , Iran

47. Friedrich-Baur-Institute at the Department of Neurology, University Hospital, LMU Munich , Munich , Germany

48. Deutsches Krebsforschungszentrum , Heidelberg , Germany

49. Medizinisch Genetisches Zentrum , Munich, German

50. Multidisciplinary Center for Prenatal Diagnosis, Pôle Mère Enfant, Maison de Santé Protestante Bordeaux Bagatelle , Talence , France

51. Équipe Génétique des Anomalies du Développement (GAD) , INSERM UMR1231, Dijon , France

52. Unité Fonctionnelle Innovation en Diagnostic génomique des maladies rares, FHU-TRANSLAD, Dijon University Hospital , Dijon , France

53. Division of Human Genetics, Department of Pediatrics, Inselspital, University of Bern , Switzerland

54. Institute of Human Genetics, Klinikum rechts der Isar, Technical University Munich , Munich , Germany

55. Children's Hospital of Eastern Ontario Research Institute, University of Ottawa , Ottawa , Canada

56. Division of Neurology, Department of Medicine, The Ottawa Hospital , Ottawa , Canada

57. Department of pediatrics, Zabol University of medical sciences , Zabol , Iran

58. Department of Pediatric Neurology, The Children's Hospital and the University of Child Health Sciences , Lahore , Pakistan

59. Division of Human Genetics, Children's Hospital of Philadelphia, University of Pennsylvania School of Medicine , Philadelphia, PA , USA

60. Children's National Research Institute , Washington DC , USA

61. Haghighat Medical Imaging center–Tehran , Tehran , Iran

62. GeneDx, Gaithersburg , MD , USA

63. Department of Pediatrics, Faculty of Medicine and University Hospital Cologne, University of Cologne , Cologne , Germany

64. Max-Planck-Institute for Biology of Ageing and CECAD , Cologne , Germany

65. Department of Paediatric Neurology - Neuromuscular Service, Evelina London Children's Hospital, Guy's & St Thomas' Hospital NHS Foundation Trust , London , UK

66. Randall Centre for Cell and Molecular Biophysics, Muscle Signalling Section, Faculty of Life Sciences and Medicine (FoLSM), King's College London , London , UK

67. Department of Pediatrics, Stanford University , Stanford, CA , USA

68. Division of Genetics, Genomics, and Metabolism, Ann and Robert H. Lurie Children's Hospital of Chicago , Chicago , USA

69. Laboratory of Medical Genetics, Medical School, National and Kapodistrian University of Athens , St. Sophia's Children's Hospital, Athens , Greece

70. Center for Rare Diseases, University of Leipzig Medical Center , Leipzig , Germany

71. Institut National de la Santé et de la Recherche Médicale (Inserm), UMR-1195, Université Paris Saclay , Le Kremlin Bicêtre, 94276, Paris , France

72. Neurologie et réanimation pédiatrique, Hôpital Raymond Poincaré , APHP, Garches , France

73. Department of Medical Genetics, Kepler University Hospital, Johann Kepler University , Linz , Austria

74. Human Genome Sequencing Center, Baylor College of Medicine , Houston, TX , USA

75. Department of Pediatrics, Baylor College of Medicine , Houston, TX , USA

76. Murdoch Children's Research Institute, Melbourne and Department of Paediatrics, Melbourne Medical School, University of Melbourne , Melbourne, VIC , Australia

77. Department of Pediatrics and Medicine, Columbia University New York , NY , USA

78. KU Leuven Department of Neurosciences, Leuven Brain Institute , Leuven , Belgium

79. VIB-KU Leuven Center for Brain and Disease Research, Laboratory for Dystonia Research , Leuven , Belgium

80. Department of Oncology & Metabolism, University of Sheffield , UK

81. Autism & Developmental Medicine Institute, Genomic Medicine Institute , Department of Radiology, Diagnostic Medicine Institute, Geisinger, Danville, PA , USA

82. Clinical Genetics Service, Nottingham University Hospitals NHS Trust , Nottingham , UK

83. Movement Disorders Program, Department of Neurology, Boston Children's Hospital , Harvard Medical School, Boston, MA , USA

84. The Manton Center for Orphan Disease Research, Boston Children's Hospital , Boston, MA , USA

85. Intellectual and Developmental Disabilities Research Center, Boston Children's Hospital , Boston, MA , USA

Abstract

Abstract In the field of rare diseases, progress in molecular diagnostics led to the recognition that variants linked to autosomal-dominant neurodegenerative diseases of later onset can, in the context of biallelic inheritance, cause devastating neurodevelopmental disorders and infantile or childhood-onset neurodegeneration. TOR1A-associated arthrogryposis multiplex congenita 5 (AMC5) is a rare neurodevelopmental disorder arising from biallelic variants in TOR1A, a gene that in the heterozygous state is associated with torsion dystonia-1 (DYT1 or DYT-TOR1A), an early-onset dystonia with reduced penetrance. While 15 individuals with AMC5-TOR1A have been reported (less than 10 in detail), a systematic investigation of the full disease-associated spectrum has not been conducted. Here, we assess the clinical, radiological and molecular characteristics of 57 individuals from 40 families with biallelic variants in TOR1A. Median age at last follow-up was 3 years (0–24 years). Most individuals presented with severe congenital flexion contractures (95%) and variable developmental delay (79%). Motor symptoms were reported in 79% and included lower limb spasticity and pyramidal signs, as well as gait disturbances. Facial dysmorphism was an integral part of the phenotype, with key features being a broad/full nasal tip, narrowing of the forehead and full cheeks. Analysis of disease-associated manifestations delineated a phenotypic spectrum ranging from normal cognition and mild gait disturbance to congenital arthrogryposis, global developmental delay, intellectual disability, absent speech and inability to walk. In a subset, the presentation was consistent with foetal akinesia deformation sequence with severe intrauterine abnormalities. Survival was 71%, with higher mortality in males. Death occurred at a median age of 1.2 months (1 week–9 years), due to respiratory failure, cardiac arrest or sepsis. Analysis of brain MRI studies identified non-specific neuroimaging features, including a hypoplastic corpus callosum (72%), foci of signal abnormality in the subcortical and periventricular white matter (55%), diffuse white matter volume loss (45%), mega cisterna magna (36%) and arachnoid cysts (27%). The molecular spectrum included 22 distinct variants, defining a mutational hotspot in the C-terminal domain of the Torsin-1A protein. Genotype-phenotype analysis revealed an association of missense variants in the 3-helix bundle domain to an attenuated phenotype, while missense variants near the Walker A/B motif as well as biallelic truncating variants were linked to early death. In summary, this systematic cross-sectional analysis of a large cohort of individuals with biallelic TOR1A variants across a wide age-range delineates the clinical and genetic spectrum of TOR1A-related autosomal-recessive disease and highlights potential predictors for disease severity and survival.

Funder

Deutsche Forschungsgemeinschaft

US National Institutes of Health

National Human Genome Research Institute

National Heart, Lung, and Blood Institute

European Union

Canadian Institutes of Health Research

Canada Foundation for Innovation

Publisher

Oxford University Press (OUP)

Subject

Neurology (clinical)

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