BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test-Reference-Cited by-同舟云学术

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BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test

Published:2018-11-14 Issue:2 Volume:47 Page:e11-e11
ISSN:0305-1048
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Youn Ahrim¹,Marquez Eladio J¹,Lawlor Nathan¹,Stitzel Michael L¹²³,Ucar Duygu¹²³

Affiliation:

1. The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA

2. Institute for Systems Genomics, University of Connecticut Health Center, Farmington, CT 06030, USA

3. Department of Genetics & Genome Sciences, University of Connecticut Health Center, Farmington, CT 06030, USA

Funder

National Institute of General Medical Sciences

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

http://academic.oup.com/nar/article-pdf/47/2/e11/27581728/gky1117.pdf

Reference42 articles.

1. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting;Hesselberth;Nat. Methods,2009

2. Differential chromatin profiles partially determine transcription factor binding;Chen;PLoS One,2017

3. Genome-wide footprinting: ready for prime time;Sung;Nat. Methods,2016

4. An expansive human regulatory lexicon encoded in transcription factor footprints;Neph;Nature,2012

5. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data;Pique-Regi;Genome Res.,2011

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2. GNNMF: a multi-view graph neural network for ATAC-seq motif finding;BMC Genomics;2024-03-21

3. Transcriptional activation of Jun and Fos members of the AP‐1 complex is a conserved signature of immune aging that contributes to inflammaging;Aging Cell;2023-02-24

4. RUNX1 is required in granulocyte-monocyte progenitors to attenuate inflammatory cytokine production by neutrophils;2023-01-28

5. Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging;2022-08-15

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