Digital Extended Specimens: Enabling an Extensible Network of Biodiversity Data Records as Integrated Digital Objects on the Internet

Author:

Hardisty Alex R1ORCID,Ellwood Elizabeth R2ORCID,Nelson Gil2,Zimkus Breda3,Buschbom Jutta4,Addink Wouter5,Rabeler Richard K6,Bates John7,Bentley Andrew8,Fortes José A B9,Hansen Sara10,Macklin James A11,Mast Austin R12,Miller Joseph T13,Monfils Anna K10ORCID,Paul Deborah L14,Wallis Elycia15,Webster Michael16ORCID

Affiliation:

1. Cardiff University , Cardiff, Wales, United Kingdom

2. Florida Museum of Natural History , Gainesville, Florida, United States

3. Museum of Comparative Zoology , Cambridge, Massachusetts, United States

4. Statistical Genetics , Ahrensburg, Germany

5. Naturalis Biodiversity Center , Leiden, Netherlands

6. University of Michigan Herbarium , Ann Arbor, Michigan, United States

7. Field Museum of Natural History , Chicago, Illinois, United States

8. Biodiversity Institute, University of Kansas , Lawrence, Kansas, United States

9. University of Florida , Gainesville, Florida, United States

10. Central Michigan University Herbarium, Central Michigan University , Mt. Pleasant, Michigan, United States

11. Agriculture and Agri-Food Canada , Ottawa, Ontario, Canada

12. Department of Biological Science, Florida State University , Tallahassee, Florida, United States

13. Global Biodiversity Information Facility Secretariat , Copenhagen, Denmark

14. University of Illinois Urbana Champaign , Champaign, Illinois, United States

15. Atlas of Living Australia, CSIRO , Melbourne, Australia

16. Macaulay Library, Cornell Lab of Ornithology , Ithaca, New York, United States

Abstract

Abstract The early twenty-first century has witnessed massive expansions in availability and accessibility of digital data in virtually all domains of the biodiversity sciences. Led by an array of asynchronous digitization activities spanning ecological, environmental, climatological, and biological collections data, these initiatives have resulted in a plethora of mostly disconnected and siloed data, leaving to researchers the tedious and time-consuming manual task of finding and connecting them in usable ways, integrating them into coherent data sets, and making them interoperable. The focus to date has been on elevating analog and physical records to digital replicas in local databases prior to elevating them to ever-growing aggregations of essentially disconnected discipline-specific information. In the present article, we propose a new interconnected network of digital objects on the Internet—the Digital Extended Specimen (DES) network—that transcends existing aggregator technology, augments the DES with third-party data through machine algorithms, and provides a platform for more efficient research and robust interdisciplinary discovery.

Funder

European Union

National Science Foundation

Publisher

Oxford University Press (OUP)

Subject

General Agricultural and Biological Sciences

Reference49 articles.

1. Alliance for Biodiversity Knowledge;[ABK] Alliance for Biodiversity Knowledge,2021

2. The Global Taxonomy Initiative in Support of the Post-2020 Global Biodiversity Framework;Abrahamse,2021

3. “openDS”: Progress on the new standard for digital specimens;Addink;Biodiversity Information Science and Standards,2020

4. Stewardship of global collective behavior;Bak-Coleman;Proceedings of the National Academy of Sciences,2021

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