Crucial role of iron in epigenetic rewriting during adipocyte differentiation mediated by JMJD1A and TET2 activity

Author:

Suzuki Tomohiro1,Komatsu Tetsuro1,Shibata Hiroshi1,Tanioka Akiko1,Vargas Diana1ORCID,Kawabata-Iwakawa Reika2ORCID,Miura Fumihito3ORCID,Masuda Shinnosuke1,Hayashi Mayuko1,Tanimura-Inagaki Kyoko14,Morita Sumiyo5,Kohmaru Junki6,Adachi Koji7,Tobo Masayuki6,Obinata Hideru8,Hirayama Tasuku9,Kimura Hiroshi10ORCID,Sakai Juro1112,Nagasawa Hideko9,Itabashi Hideyuki13,Hatada Izuho514,Ito Takashi3ORCID,Inagaki Takeshi1ORCID

Affiliation:

1. Laboratory of Epigenetics and Metabolism, Institute for Molecular and Cellular Regulation, Gunma University , Gunma 371-8512 , Japan

2. Division of Integrated Oncology Research, Gunma University Initiative for Advanced Research, Gunma University , Gunma 371-8511 , Japan

3. Department of Biochemistry, Kyushu University Graduate School of Medical Sciences , Fukuoka 812-8582, Japan

4. Department of Endocrinology, Metabolism and Nephrology, Graduate School of Medicine, Nippon Medical School , Tokyo 113-8602, Japan

5. Laboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Gunma 371-8512 , Japan

6. Institute for Molecular and Cellular Regulation Joint Usage/Research Support Center, Gunma University , Gunma 371-8512 , Japan

7. Kaihin Makuhari Laboratory, PerkinElmer Japan Co., Ltd. , Chiba 261-8501 , Japan

8. Education and Research Support Center, Gunma University Graduate School of Medicine , Gunma 371-8511 , Japan

9. Laboratory of Pharmaceutical and Medicinal Chemistry, Gifu Pharmaceutical University , Gifu 501-1196 , Japan

10. Cell Biology Center, Tokyo Institute of Technology , Kanagawa 226-8503 , Japan

11. Division of Metabolic Medicine, Research Center for Advanced Science and Technology, The University of Tokyo , Tokyo 153-8904 , Japan

12. Division of Molecular Physiology and Metabolism, Tohoku University Graduate School of Medicine , Sendai 980-8575, Japan

13. Graduate School of Science and Technology, Gunma University , Gunma 376-8515 , Japan

14. Viral Vector Core, Gunma University Initiative for Advanced Research , Gunma 371-8511 , Japan

Abstract

Abstract Iron metabolism is closely associated with the pathogenesis of obesity. However, the mechanism of the iron-dependent regulation of adipocyte differentiation remains unclear. Here, we show that iron is essential for rewriting of epigenetic marks during adipocyte differentiation. Iron supply through lysosome-mediated ferritinophagy was found to be crucial during the early stage of adipocyte differentiation, and iron deficiency during this period suppressed subsequent terminal differentiation. This was associated with demethylation of both repressive histone marks and DNA in the genomic regions of adipocyte differentiation-associated genes,  including Pparg, which encodes PPARγ, the master regulator of adipocyte differentiation. In addition, we identified several epigenetic demethylases to be responsible for iron-dependent adipocyte differentiation, with the histone demethylase jumonji domain-containing 1A and the DNA demethylase ten-eleven translocation 2 as the major enzymes. The interrelationship between repressive histone marks and DNA methylation was indicated by an integrated genome-wide association analysis, and was also supported by the findings that both histone and DNA demethylation were suppressed by either the inhibition of lysosomal ferritin flux or the knockdown of iron chaperone poly(rC)-binding protein 2. In summary, epigenetic regulations through iron-dependent control of epigenetic enzyme activities play an important role in the organized gene expression mechanisms of adipogenesis.

Funder

MEXT/JSPS KAKENHI

Japanese Agency for Medical Research and Development

MEXT

Gunma University Initiative for Advanced Research

Takeda Science Foundation

Publisher

Oxford University Press (OUP)

Subject

Genetics

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