Cell type discovery using single-cell transcriptomics: implications for ontological representation-Reference-Cited by-同舟云学术

Cell type discovery using single-cell transcriptomics: implications for ontological representation

Published:2018-03-24 Issue:R1 Volume:27 Page:R40-R47
ISSN:0964-6906
Container-title:Human Molecular Genetics
language:en
Short-container-title:

Author:

Aevermann Brian D¹,Novotny Mark¹,Bakken Trygve²^ORCID,Miller Jeremy A²,Diehl Alexander D³,Osumi-Sutherland David⁴,Lasken Roger S¹,Lein Ed S²,Scheuermann Richard H¹⁵^ORCID

Affiliation:

1. J. Craig Venter Institute, La Jolla, CA 92037, USA

2. Allen Institute for Brain Science, Seattle, WA 98109, USA

3. Department of Biomedical Informatics, University at Buffalo, Buffalo, NY 14203, USA

4. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK

5. Department of Pathology, University of California San Diego, La Jolla, CA 92093, USA

Funder

California Institute for Regenerative Medicine

Wellcome Trust

Silicon Valley Community Foundation

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology,General Medicine

Link

http://academic.oup.com/hmg/article-pdf/27/R1/R40/25087304/ddy100.pdf

Reference42 articles.

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2. Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis;Tang;Cell Stem Cell,2010

3. An ontology for cell types;Bard;Genome Biol,2005

4. Cell type discovery and representation in the era of high-content single cell phenotyping;Bakken;BMC Bioinformatics,2017

5. Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq;Zeisel;Science,2015

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