Helper T cell immunity in humans with inherited CD4 deficiency

Author:

Guérin Antoine12ORCID,Moncada-Vélez Marcela34ORCID,Jackson Katherine1ORCID,Ogishi Masato3ORCID,Rosain Jérémie3567ORCID,Mancini Mathieu8910ORCID,Langlais David8910ORCID,Nunez Andrea11ORCID,Webster Samantha11ORCID,Goyette Jesse11ORCID,Khan Taushif1213ORCID,Marr Nico1214ORCID,Avery Danielle T.12ORCID,Rao Geetha12ORCID,Waterboer Tim15ORCID,Michels Birgitta15ORCID,Neves Esmeralda1617ORCID,Iracema Morais Cátia1617ORCID,London Jonathan18ORCID,Mestrallet Stéphanie19ORCID,Quartier dit Maire Pierre20ORCID,Neven Bénédicte20ORCID,Rapaport Franck3ORCID,Seeleuthner Yoann56ORCID,Lev Atar2122232425ORCID,Simon Amos J.2122232425ORCID,Montoya Jorge26ORCID,Barel Ortal27ORCID,Gómez-Rodríguez Julio28ORCID,Orrego Julio C.4ORCID,L’Honneur Anne-Sophie2930ORCID,Soudée Camille56ORCID,Rojas Jessica4ORCID,Velez Alejandra C.4ORCID,Sereti Irini31ORCID,Terrier Benjamin32ORCID,Marin Nancy33ORCID,García Luis F.33ORCID,Abel Laurent356ORCID,Boisson-Dupuis Stéphanie356ORCID,Reis Joel34ORCID,Marinho Antonio3536,Lisco Andrea28ORCID,Faria Emilia37ORCID,Goodnow Christopher C.12ORCID,Vasconcelos Julia1617ORCID,Béziat Vivien356ORCID,Ma Cindy S.12ORCID,Somech Raz2122232425ORCID,Casanova Jean-Laurent356383940ORCID,Bustamante Jacinta3567ORCID,Franco Jose Luis4ORCID,Tangye Stuart G.12ORCID

Affiliation:

1. Garvan Institute of Medical Research 1 , Darlinghurst, Australia

2. School of Clinical Medicine, University of New South Wales Sydney 2 Faculty of Medicine and Health, , Sydney, Australia

3. Rockefeller Branch, The Rockefeller University 3 St. Giles Laboratory of Human Genetics of Infectious Diseases, , New York, NY, USA

4. School of Medicine, University of Antioquia UdeA 4 Primary Immunodeficiencies Group, Department of Microbiology and Parasitology, , Medellin, Colombia

5. Necker Branch, INSERM U1163, Necker Hospital for Sick Children 5 Laboratory of Human Genetics of Infectious Diseases, , Paris, France

6. Paris Cité University, Imagine Institute 6 , Paris, France

7. Study Center for Primary Immunodeficiencies, Necker Hospital for Sick Children, Assistance Publique–Hôpitaux de Paris 7 , Paris, France

8. McGill University 8 Department of Human Genetics, , Montreal, Canada

9. McGill University 9 Department of Microbiology and Immunology, , Montreal, Canada

10. Dahdaleh Institute of Genomic Medicine, McGill Research Centre on Complex Traits, McGill University 10 , Montreal, Canada

11. School of Biomedical Sciences, University of New South Wales 11 Department of Molecular Medicine, , Sydney, Australia

12. Sidra Medicine 12 Department of Human Immunology, , Doha, Qatar

13. The Jackson Laboratory 14 , Farmington, CT, USA

14. Hamad Bin Khalifa University 13 College of Health and Life Sciences, , Doha, Qatar

15. German Cancer Research Center 15 Division of Infections and Cancer Epidemiology, , Heidelberg, Germany

16. University Hospital Center of Porto 16 Immunology Department—Pathology, , Porto, Portugal

17. Institute of Biomedical Sciences Abel Salazar, University of Porto 17 Unit for Multidisciplinary Research in Biomedicine, , Porto, Portugal

18. Service of Internal Medicine, Diaconesse-Croix Saint Simon Hospital 18 , Paris, France

19. Manchester Hospital 19 Department of Internal Medicine and Infectious Diseases, , Charleville-Mézières, France

20. Necker Hospital for Sick Children 20 Pediatric Immunology-Hematology and Rheumatology Unit, , Paris, France

21. Department of Pediatrics and 21 , , , , Tel Aviv, Israel

22. Immunology Service 21 , , , , Tel Aviv, Israel

23. Edmond and Lily Safra Children's Hospital 21 , , , , Tel Aviv, Israel

24. Sheba Medical Center 21 , , , , Tel Aviv, Israel

25. Tel Aviv School of Medicine 21 , , , , Tel Aviv, Israel

26. San Vicente de Paul University Hospital 22 , Medellin, Colombia

27. Sheba Cancer Research Center, Sheba Medical Center 23 The Genomic Unit, , Ramat Gan, Israel

28. National Human Genome Research Institute, National Institutes of Health 24 , Bethesda, MD, USA

29. Paris Cité University and Cochin Hospital 25 Department of Virology, , , Paris, France

30. Assistance Publique-Hôpitaux de Paris 25 Department of Virology, , , Paris, France

31. National Institute of Allergy and Infectious Diseases, National Institutes of Health 26 , Bethesda, MD, USA

32. Cochin Hospital, Assistance Publique–Hôpitaux de Paris, Paris Cité University 27 Department of Internal Medicine, , Paris, France

33. Cellular Immunology and Immunogenetics Group, University of Antioquia UdeA 28 , Medellin, Colombia

34. University Hospital Center of Porto 29 Dermatology Service, , Porto, Portugal

35. School of Medicine and Biomedical Sciences, University of Porto 30 , Porto, Portugal

36. University Hospital Center of Porto 31 Department of Clinical Immunology, , Porto, Portugal

37. University Hospital Center of Coimbra 32 Allergy and Clinical Immunology Department, , Coimbra, Portugal

38. Howard Hughes Medical Institute 33 , New York, NY, USA

39. Necker Hospital for Sick Children, 34 Department of Pediatrics, , Paris, France

40. Assistance Publique–Hôpitaux de Paris 34 Department of Pediatrics, , Paris, France

Abstract

CD4+ T cells are vital for host defense and immune regulation. However, the fundamental role of CD4 itself remains enigmatic. We report seven patients aged 5–61 years from five families of four ancestries with autosomal recessive CD4 deficiency and a range of infections, including recalcitrant warts and Whipple’s disease. All patients are homozygous for rare deleterious CD4 variants impacting expression of the canonical CD4 isoform. A shorter expressed isoform that interacts with LCK, but not HLA class II, is affected by only one variant. All patients lack CD4+ T cells and have increased numbers of TCRαβ+CD4−CD8− T cells, which phenotypically and transcriptionally resemble conventional Th cells. Finally, patient CD4−CD8− αβ T cells exhibit intact responses to HLA class II–restricted antigens and promote B cell differentiation in vitro. Thus, compensatory development of Th cells enables patients with inherited CD4 deficiency to acquire effective cellular and humoral immunity against an unexpectedly large range of pathogens. Nevertheless, CD4 is indispensable for protective immunity against at least human papillomaviruses and Trophyrema whipplei.

Funder

National Institute of Allergy and Infectious Diseases

Rockefeller University

St. Giles Foundation

Institut National de la Santé et de la Recherche Médicale

Paris Cité University

Laboratoire d’Excellence Integrative—Biology of Emerging Infectious Diseases

French National Research Agency

ECOS-Nord/Ministerio de Ciencia, Tecnología e Innovación of Colombia

GENMSMD

National Health and Medical Research Council

American Association of Immunologists

Scheinberg Fellowship

Bettencourt-Schueller Foundation

Imagine Institute

David Rockefeller Graduate Program

Funai Foundation for Information Technology

Honjo International Scholarship Foundation

New York Hideyo Noguchi Memorial Society

Latin American Society for Primary Immunodeficiencies

ITMO Cancer of Aviesan

INCa

Publisher

Rockefeller University Press

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