VirSorter: mining viral signal from microbial genomic data-Reference-Cited by-同舟云学术

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VirSorter: mining viral signal from microbial genomic data

Published:2015-05-28 Issue: Volume:3 Page:e985
ISSN:2167-8359
Container-title:PeerJ
language:en
Short-container-title:

Author:

Roux Simon¹,Enault Francois²³,Hurwitz Bonnie L.⁴,Sullivan Matthew B.¹

Affiliation:

1. Ecology and Evolutionary Biology, University of Arizona, USA

2. Clermont Université, Université Blaise Pascal, Laboratoire “Microorganismes: Génome et Environnement,”, Clermont-Ferrand, France

3. CNRS UMR 6023, LMGE, Aubière, France

4. Department of Agricultural and Biosystems Engineering, University of Arizona, USA

Publisher

PeerJ

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

Link

https://peerj.com/articles/985.pdf

Reference59 articles.

1. PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies;Akhter;Nucleic Acids Research,2012

2. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes;Albertsen;Nature Biotechnology,2013

3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Research,1997

4. Sulfur oxidation genes in diverse deep-sea viruses;Anantharaman;Science,2014

5. Bacteriophage-encoded bacterial virulence factors and phage-pathogenicity island interactions;Boyd,2012

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