Forecasting the COVID-19 transmission in Italy based on the minimum spanning tree of dynamic region network

Abstract

Background Italy surpassed 1.5 million confirmed Coronavirus Disease 2019 (COVID-19) infections on November 26, as its death toll rose rapidly in the second wave of COVID-19 outbreak which is a heavy burden on hospitals. Therefore, it is necessary to forecast and early warn the potential outbreak of COVID-19 in the future, which facilitates the timely implementation of appropriate control measures. However, real-time prediction of COVID-19 transmission and outbreaks is usually challenging because of its complexity intertwining both biological systems and social systems. Methods By mining the dynamical information from region networks and the short-term time series data, we developed a data-driven model, the minimum-spanning-tree-based dynamical network marker (MST-DNM), to quantitatively analyze and monitor the dynamical process of COVID-19 spreading. Specifically, we collected the historical information of daily cases caused by COVID-19 infection in Italy from February 24, 2020 to November 28, 2020. When applied to the region network of Italy, the MST-DNM model has the ability to monitor the whole process of COVID-19 transmission and successfully identify the early-warning signals. The interpretability and practical significance of our model are explained in detail in this study. Results The study on the dynamical changes of Italian region networks reveals the dynamic of COVID-19 transmission at the network level. It is noteworthy that the driving force of MST-DNM only relies on small samples rather than years of time series data. Therefore, it is of great potential in public surveillance for emerging infectious diseases.