Algorithms for Colinear Chaining with Overlaps and Gap Costs-Reference-Cited by-同舟云学术

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Algorithms for Colinear Chaining with Overlaps and Gap Costs

Published:2022-11-01 Issue:11 Volume:29 Page:1237-1251
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Jain Chirag¹,Gibney Daniel²^ORCID,Thankachan Sharma V.³

Affiliation:

1. Department of Computational and Data Sciences, Indian Institute of Science, Bengaluru, India.

2. School of Computational Science and Engineering, Georgia Institute of Technology Atlanta, Georgia, USA.

3. Department of Computer Science, University of Central Florida, Orlando, Florida, USA.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2022.0266

Reference29 articles.

1. Chaining algorithms for multiple genome comparison

2. CoCoNUT: an efficient system for the comparison and analysis of genomes

3. AVID: A Global Alignment Program

4. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

5. Alignment of whole genomes

Cited by 4 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Label-guided seed-chain-extend alignment on annotated De Bruijn graphs;Bioinformatics;2024-06-28

2. Co-linear chaining on pangenome graphs;Algorithms for Molecular Biology;2024-01-27

3. Chaining for accurate alignment of erroneous long reads to acyclic variation graphs;Bioinformatics;2023-07-26

4. Co-linear Chaining on Pangenome Graphs;2023-06-24

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