VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data

Author:

Wagner Darlene D.1ORCID,Marine Rachel L.2ORCID,Ramos Edward3ORCID,Ng Terry Fei Fan2ORCID,Castro Christina J.4ORCID,Okomo-Adhiambo Margaret5ORCID,Harvey Krysten4,Doho Gregory3,Kelly Reagan3ORCID,Jain Yatish3ORCID,Tatusov Roman L.13,Silva Hideky3ORCID,Rota Paul A.2ORCID,Khan Agha N.5,Oberste M. Steven2

Affiliation:

1. Eagle Global Scientific LLC, Atlanta, Georgia, USA

2. Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

3. General Dynamics Information Technology, Atlanta, Georgia, USA

4. Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee, USA

5. Office of Informatics, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

Abstract

Computational infrastructure and bioinformatics analysis are bottlenecks in the application of NGS to viral pathogens. As of September 2021, VPipe has been used by the U.S.

Funder

HHS | Centers for Disease Control and Prevention

Publisher

American Society for Microbiology

Subject

Infectious Diseases,Cell Biology,Microbiology (medical),Genetics,General Immunology and Microbiology,Ecology,Physiology

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