mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements-Reference-Cited by-同舟云学术

mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements

Published:2022-09-22 Issue:18 Volume:88 Page:
ISSN:0099-2240
Container-title:Applied and Environmental Microbiology
language:en
Short-container-title:Appl Environ Microbiol

Author:

Brown Connor L.¹^ORCID,Mullet James²,Hindi Fadi²,Stoll James E.³,Gupta Suraj¹,Choi Minyoung²,Keenum Ishi²,Vikesland Peter²,Pruden Amy²^ORCID,Zhang Liqing⁴

Affiliation:

1. Department of Genetics, Bioinformatics, and Computational Biology, Virginia Tech, Blacksburg, Virginia, USA

2. Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia, USA

3. Fralin Life Science Institute, Blacksburg, Virginia, USA

4. Department of Computer Science, Virginia Tech, Blacksburg, Virginia, USA

Abstract

The analysis of bacterial mobile genetic elements (MGEs) in genomic data is a critical step toward profiling the root causes of antibiotic resistance, phenotypic or metabolic diversity, and the evolution of bacterial genera. Existing methods for MGE annotation pose high barriers of biological and computational expertise to properly harness.

Funder

National Science Foundation

U.S. Department of Agriculture

Water Research Foundation

Publisher

American Society for Microbiology

Subject

Ecology,Applied Microbiology and Biotechnology,Food Science,Biotechnology

Link

https://journals.asm.org/doi/pdf/10.1128/aem.00991-22

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