Evaluation of Luminex xTAG Gastrointestinal Pathogen Panel Assay for Detection of Multiple Diarrheal Pathogens in Fecal Samples in Vietnam

Author:

Duong Vu Thuy12,Phat Voong Vinh1,Tuyen Ha Thanh1,Dung Tran Thi Ngoc1,Trung Pham Duc1,Minh Pham Van1,Tu Le Thi Phuong1,Campbell James I.13,Le Phuc Hoang2,Ha Ton Thi Thanh2,Ngoc Nguyen Minh4,Huong Nguyen Thi Thanh4,Tam Pham Thi Thanh1,Huong Dang Thao1,Xang Nguyen Van5,Dong Nguyen5,Phuong Le Thi6,Hung Nguyen Van7,Phu Bui Duc8,Phuc Tran My1,Thwaites Guy E.13,Vi Lu Lan9,Rabaa Maia A.13,Thompson Corinne N.13,Baker Stephen1310

Affiliation:

1. The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

2. Children's Hospital 1, Ho Chi Minh City, Vietnam

3. Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, Oxford University, Oxford, United Kingdom

4. Children's Hospital 2, Ho Chi Minh City, Vietnam

5. Khanh Hoa General Hospital, Khanh Hoa, Vietnam

6. Dong Thap General Hospital, Dong Thap, Vietnam

7. Dak Lak General Hospital, Dak Lak, Vietnam

8. Hue Central Hospital, Thua Thien Hue, Vietnam

9. Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam

10. The London School of Hygiene and Tropical Medicine, London, United Kingdom

Abstract

ABSTRACT Diarrheal disease is a complex syndrome that remains a leading cause of global childhood morbidity and mortality. The diagnosis of enteric pathogens in a timely and precise manner is important for making treatment decisions and informing public health policy, but accurate diagnosis is a major challenge in industrializing countries. Multiplex molecular diagnostic techniques may represent a significant improvement over classical approaches. We evaluated the Luminex xTAG gastrointestinal pathogen panel (GPP) assay for the detection of common enteric bacterial and viral pathogens in Vietnam. Microbiological culture and real-time PCR were used as gold standards. The tests were performed on 479 stool samples collected from people admitted to the hospital for diarrheal disease throughout Vietnam. Sensitivity and specificity were calculated for the xTAG GPP for the seven principal diarrheal etiologies. The sensitivity and specificity for the xTAG GPP were >88% for Shigella spp., Campylobacter spp., rotavirus, norovirus genotype 1/2 (GI/GII), and adenovirus compared to those of microbiological culture and/or real-time PCR. However, the specificity was low (∼60%) for Salmonella species. Additionally, a number of important pathogens that are not identified in routine hospital procedures in this setting, such as Cryptosporidium spp. and Clostridium difficile , were detected with the GPP. The use of the Luminex xTAG GPP for the detection of enteric pathogens in settings, like Vietnam, would dramatically improve the diagnostic accuracy and capacity of hospital laboratories, allowing for timely and appropriate therapy decisions and a wider understanding of the epidemiology of pathogens associated with severe diarrheal disease in low-resource settings.

Funder

Wellcome Trust

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

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