Genomic Characterization of Tilapia Lake Virus Isolates Recovered from Moribund Nile Tilapia ( Oreochromis niloticus ) on a Farm in the United States-Reference-Cited by-同舟云学术

Genomic Characterization of Tilapia Lake Virus Isolates Recovered from Moribund Nile Tilapia ( Oreochromis niloticus ) on a Farm in the United States

Published:2020-01-23 Issue:4 Volume:9 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Ahasan Mohammad Shamim¹²³^ORCID,Keleher William⁴,Giray Cem⁴,Perry Brenda⁴,Surachetpong Win⁵⁶,Nicholson Pamela⁷,Al-Hussinee Lowia¹²,Subramaniam Kuttichantran¹²^ORCID,Waltzek Thomas B.¹²^ORCID

Affiliation:

1. Department of Infectious Diseases and Immunology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA

2. Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA

3. Faculty of Veterinary and Animal Sciences, Hajee Mohammad Danesh Science and Technology University, Dinajpur, Rangpur, Bangladesh

4. Kennebec River Biosciences, Richmond, Maine, USA

5. Center for Advanced Studies for Agriculture and Food, Kasetsart University Institute for Advanced Studies, Kasetsart University, Bangkok, Thailand

6. Department of Veterinary Microbiology and Immunology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand

7. Next Generation Sequencing Platform, University of Bern, Bern, Switzerland

Abstract

Here, we present the complete coding sequences of two tilapia lake virus (TiLV) isolates recovered during an investigation of a mortality event in farmed Nile tilapia in the United States. Phylogenetic analysis supported the isolates as each other’s closest relatives and members of a clade of Thai TiLV strains.

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.01368-19

Reference8 articles.

1. Classify viruses — the gain is worth the pain

2. Complete Genome Sequence of a Tilapia Lake Virus Isolate Obtained from Nile Tilapia (Oreochromis niloticus)

3. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

4. Fast gapped-read alignment with Bowtie 2

5. Tablet--next generation sequence assembly visualization

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