Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples-Reference-Cited by-同舟云学术

Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples

Published:2022-08-30 Issue:4 Volume:7 Page:
ISSN:2379-5077
Container-title:mSystems
language:en
Short-container-title:mSystems

Author:

Sun Yue¹,Qu Yonggang²,Yan Xiaomin¹,Yan Guangzhi¹,Chen Junjie¹,Wang Guoshuai¹,Zhao Zihan¹,Liu Yang¹,Tu Changchun¹³^ORCID,He Biao¹⁴³^ORCID

Affiliation:

1. Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, Jilin Province, China

2. College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang Uyghur Autonomous Region, China

3. Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonosis, Yangzhou University, Yangzhou, Jiangsu Province, China

4. Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, Sichuan Province, China

Abstract

Viral metagenomics can be roughly divided into species richness-based studies and species abundance-based analyses. Viromic methods with different principles have been developed, but rational selection of these techniques according to different purposes requires comprehensive understanding of their properties.

Funder

National Natural Science Foundation of China

MOST | National Key Research and Development Program of China

the Open Foundation of the Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/msystems.00430-22

Reference66 articles.

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4. Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome

5. Horizontal gene transfer among genomes: The complexity hypothesis

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