Complete genome sequence of <i>Pigmentibacter ruber</i> isolated from a human patient in Japan-Reference-Cited by-同舟云学术

Complete genome sequence of Pigmentibacter ruber isolated from a human patient in Japan

Published:2024-09-10 Issue:9 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Hayashi Masahiro¹²³^ORCID,Niwa Ayumi⁴,Yonetamari Jun⁴⁵,Muto Yoshinori²,Yokoyama Sodai²⁴,Nakamura Motohiro⁴,Yokobori Yuta⁴,Ogawa Mizuki⁴,Ichioka Rina⁴,Kikuchi Ryosuke⁴,Okura Hiroyuki⁶,Ogura Shinji⁷,Tetsuka Nobuyuki⁸,Baba Hisashi⁹,Tanaka Kaori¹²³

Affiliation:

1. Institute for Glyco-core Research iGCORE, Gifu University, Gifu City, Gifu, Japan

2. Division of Anaerobe Research, Life Science Research Center, Gifu University, Gifu, Japan

3. Gifu University Center for Conservation of Microbial Genetic Resource, Gifu, Japan

4. Division of Clinical Laboratory, Gifu University Hospital, Gifu, Japan

5. United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu City, Gifu, Japan

6. Department of Cardiology, Gifu University Graduate School of Medicine, Gifu, Japan

7. Department of Emergency and Disaster Medicine, Gifu University Graduate School of Medicine, Gifu, Japan

8. Department of Infection Control, Gifu University Graduate School of Medicine, Gifu, Japan

9. Center for Nutrition Support and Infection Control, Gifu University Hospital, Gifu, Japan

Abstract

ABSTRACT Pigmentibacter ruber is a newly described bacterium belonging to the Silvanigrellaceae family that was isolated from human blood in 2021. We report the complete genome sequence of a clinical isolate of P. ruber (GTC16762) obtained from a human patient in Japan. Its genome contains a 3.6-Mb chromosome and three circular plasmids.

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00133-24

Reference12 articles.

1. Pigmentibacter ruber gen. nov., sp. nov., a novel bacterium of the family Silvanigrellaceae isolated from human blood

2. Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of Silvanigrellaceae fam. nov. and Silvanigrellales ord. nov., reclassification of the order Bdellovibrionales in the class Oligoflexia, reclassification of the families Bacteriovoracaceae and Halobacteriovoraceae in the new order Bacteriovoracales ord. nov., and reclassification of the family Pseudobacteriovoracaceae in the order Oligoflexales

3. First Case of Necrotizing Fasciitis and Septicemia Caused by <i>Pigmentibacter ruber</i>

4. Complete hybrid genome assembly of clinical multidrug-resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial-resistance genes and plasmids

5. Complete Genome Sequences of Three Phocaeicola vulgatus Strains Isolated from a Healthy Japanese Individual