MBX: A many-body energy and force calculator for data-driven many-body simulations

Author:

Riera Marc1ORCID,Knight Christopher2ORCID,Bull-Vulpe Ethan F.1ORCID,Zhu Xuanyu1ORCID,Agnew Henry1ORCID,Smith Daniel G. A.3ORCID,Simmonett Andrew C.4ORCID,Paesani Francesco1567ORCID

Affiliation:

1. Department of Chemistry and Biochemistry, University of California San Diego 1 , La Jolla, California 92093, USA

2. Argonne National Laboratory, Computational Science Division 2 , Lemont, Illinois 60439, USA

3. Molecular Sciences Software Institute 3 , Blacksburg, Virginia 24060, USA

4. Laboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health 4 , Bethesda, Maryland 20892, USA

5. Materials Science and Engineering, University of California San Diego 5 , La Jolla, California 92093, USA

6. Halicioǧlu Data Science Institute, University of California San Diego 6 , La Jolla, California 92093, USA

7. San Diego Supercomputer Center, University of California San Diego 7 , La Jolla, California 92093, USA

Abstract

Many-Body eXpansion (MBX) is a C++ library that implements many-body potential energy functions (PEFs) within the “many-body energy” (MB-nrg) formalism. MB-nrg PEFs integrate an underlying polarizable model with explicit machine-learned representations of many-body interactions to achieve chemical accuracy from the gas to the condensed phases. MBX can be employed either as a stand-alone package or as an energy/force engine that can be integrated with generic software for molecular dynamics and Monte Carlo simulations. MBX is parallelized internally using Open Multi-Processing and can utilize Message Passing Interface when available in interfaced molecular simulation software. MBX enables classical and quantum molecular simulations with MB-nrg PEFs, as well as hybrid simulations that combine conventional force fields and MB-nrg PEFs, for diverse systems ranging from small gas-phase clusters to aqueous solutions and molecular fluids to biomolecular systems and metal-organic frameworks.

Funder

National Science Foundation

Air Force Office of Scientific Research

U.S. Department of Energy

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

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