PESPIP: Software to fit complex molecular and many-body potential energy surfaces with permutationally invariant polynomials

Author:

Houston Paul L.12ORCID,Qu Chen3ORCID,Yu Qi4ORCID,Conte Riccardo5ORCID,Nandi Apurba6ORCID,Li Jeffrey K.6,Bowman Joel M.6ORCID

Affiliation:

1. Department of Chemistry and Chemical Biology, Cornell University 1 , Ithaca, New York 14853, USA and , Atlanta, Georgia 30332, USA

2. Department of Chemistry and Biochemistry, Georgia Institute of Technology 1 , Ithaca, New York 14853, USA and , Atlanta, Georgia 30332, USA

3. Independent Researcher 2 , Toronto, Ontario M9B0E3, Canada

4. Department of Chemistry, Yale University 3 , New Haven, Connecticut 06520, USA

5. Dipartimento di Chimica, Università Degli Studi di Milano 4 , Via Golgi 19, 20133 Milano, Italy

6. Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University 5 , Atlanta, Georgia 30322, USA

Abstract

We wish to describe a potential energy surface by using a basis of permutationally invariant polynomials whose coefficients will be determined by numerical regression so as to smoothly fit a dataset of electronic energies as well as, perhaps, gradients. The polynomials will be powers of transformed internuclear distances, usually either Morse variables, exp(−ri,j/λ), where λ is a constant range hyperparameter, or reciprocals of the distances, 1/ri,j. The question we address is how to create the most efficient basis, including (a) which polynomials to keep or discard, (b) how many polynomials will be needed, (c) how to make sure the polynomials correctly reproduce the zero interaction at a large distance, (d) how to ensure special symmetries, and (e) how to calculate gradients efficiently. This article discusses how these questions can be answered by using a set of programs to choose and manipulate the polynomials as well as to write efficient Fortran programs for the calculation of energies and gradients. A user-friendly interface for access to monomial symmetrization approach results is also described. The software for these programs is now publicly available.

Funder

Army Research Office

Biological and Physical Sciences Division

National Science Foundation

Universita Degli Studi di Milano

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

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