Author:
Chu Hsueh-Ting,Hsiao William WL,Tsao Theresa TH,Chang Ching-Mao,Liu Yen-Wenn,Fan Chen-Chieh,Lin Han,Chang Hen-Hong,Yeh Tze-Jung,Chen Jen-Chih,Huang Dun-Ming,Chen Chaur-Chin,Kao Cheng-Yan
Abstract
Abstract
Background
Mitochondrial dysfunction is associated with various aging diseases. The copy number of mtDNA in human cells may therefore be a potential biomarker for diagnostics of aging. Here we propose a new computational method for the accurate assessment of mtDNA copies from whole genome sequencing data.
Results
Two families of the human whole genome sequencing datasets from the HapMap and the 1000 Genomes projects were used for the accurate counting of mitochondrial DNA copy numbers. The results revealed the parental mitochondrial DNA copy numbers are significantly lower than that of their children in these samples. There are 8%~21% more copies of mtDNA in samples from the children than from their parents. The experiment demonstrated the possible correlations between the quantity of mitochondrial DNA and aging-related diseases.
Conclusions
Since the next-generation sequencing technology strives to deliver affordable and non-biased sequencing results, accurate assessment of mtDNA copy numbers can be achieved effectively from the output of whole genome sequencing. We implemented the method as a software package MitoCounter with the source code and user's guide available to the public at http://sourceforge.net/projects/mitocounter/.
Publisher
Springer Science and Business Media LLC
Cited by
18 articles.
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