Illumina error correction near highly repetitive DNA regions improves de novo genome assembly
Author:
Funder
FWO
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology
Link
http://link.springer.com/content/pdf/10.1186/s12859-019-2906-2.pdf
Reference40 articles.
1. Minoche AE, Dohm JC, Himmelbauer H. Evaluation of genomic high-throughput sequencing data generated on illumina hiseq and genome analyzer systems. Genome Biol. 2011; 12(11):112.
2. Nakamura K, Oshima T, Morimoto T, Ikeda S, Yoshikawa H, Shiwa Y, Ishikawa S, Linak MC, Hirai A, Takahashi H, Altaf-Ul-Amin M, Ogasawara N, Kanaya S. Sequence-specific error profile of illumina sequencers. Nucleic Acids Res. 2011; 39(13):90.
3. Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de bruijn graphs. Genome Res. 2008; 18(5):821–9.
4. Schirmer M, D’Amore R, Ijaz UZ, Hall N, Quince C. Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics. 2016; 17(1):125.
5. Sheikhizadeh S, de Ridder D. ACE: accurate correction of errors using K-mer tries,. Bioinformatics. 2015; 31(19):3216–8.
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