The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level


Lyu Syue-Yi,Lin Kuan-Hung,Yeh Hsien-Wei,Li Yi-Shan,Huang Chun-Man,Wang Yung-Lin,Shih Hao-Wei,Hsu Ning-Shian,Wu Chang-JerORCID,Li Tsung-Lin


The Y128F single mutant ofp-hydroxymandelate oxidase (Hmo) is capable of oxidizing mandelate to benzoate via a four-electron oxidative decarboxylation reaction. When benzoylformate (the product of the first two-electron oxidation) and hydrogen peroxide (an oxidant) were used as substrates the reaction did not proceed, suggesting that free hydrogen peroxide is not the committed oxidant in the second two-electron oxidation. How the flavin mononucleotide (FMN)-dependent four-electron oxidation reaction takes place remains elusive. Structural and biochemical explorations have shed new light on this issue. 15 high-resolution crystal structures of Hmo and its mutants liganded with or without a substrate reveal that oxidized FMN (FMNox) possesses a previously unknown electrophilic/nucleophilic duality. In the Y128F mutant the active-site perturbation ensemble facilitates the polarization of FMNoxto a nucleophilic ylide, which is in a position to act on an α-ketoacid, forming an N5-acyl-FMNreddead-end adduct. In four-electron oxidation, an intramolecular disproportionation reaction via an N5-alkanol-FMNredC′α carbanion intermediate may account for the ThDP/PLP/NADPH-independent oxidative decarboxylation reaction. A synthetic 5-deaza-FMNoxcofactor in combination with an α-hydroxyamide or α-ketoamide biochemically and structurally supports the proposed mechanism.


Ministry of Science and Technology, Taiwan

Academia Sinica


International Union of Crystallography (IUCr)


Structural Biology

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