Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer

Author:

Boehm Kevin M.ORCID,Aherne Emily A.,Ellenson Lora,Nikolovski Ines,Alghamdi Mohammed,Vázquez-García IgnacioORCID,Zamarin DmitriyORCID,Long Roche KaraORCID,Liu Ying,Patel DruvORCID,Aukerman Andrew,Pasha Arfath,Rose Doori,Selenica Pier,Causa Andrieu Pamela I.,Fong Chris,Capanu Marinela,Reis-Filho Jorge S.ORCID,Vanguri Rami,Veeraraghavan HariniORCID,Gangai Natalie,Sosa Ramon,Leung Samantha,McPherson Andrew,Gao JianJiong,Lakhman YuliaORCID,Shah Sohrab P.ORCID,

Abstract

AbstractPatients with high-grade serous ovarian cancer suffer poor prognosis and variable response to treatment. Known prognostic factors for this disease include homologous recombination deficiency status, age, pathological stage and residual disease status after debulking surgery. Recent work has highlighted important prognostic information captured in computed tomography and histopathological specimens, which can be exploited through machine learning. However, little is known about the capacity of combining features from these disparate sources to improve prediction of treatment response. Here, we assembled a multimodal dataset of 444 patients with primarily late-stage high-grade serous ovarian cancer and discovered quantitative features, such as tumor nuclear size on staining with hematoxylin and eosin and omental texture on contrast-enhanced computed tomography, associated with prognosis. We found that these features contributed complementary prognostic information relative to one another and clinicogenomic features. By fusing histopathological, radiologic and clinicogenomic machine-learning models, we demonstrate a promising path toward improved risk stratification of patients with cancer through multimodal data integration.

Funder

U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences

U.S. Department of Health & Human Services | NIH | NCI | Division of Cancer Epidemiology and Genetics, National Cancer Institute

Grayer Fellowship (MSKCC) Cycle for Survival

Susan G. Komen Scholars Program Cycle for Survival

Publisher

Springer Science and Business Media LLC

Subject

Cancer Research,Oncology

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