ARTR-seq for determining RNA-binding protein target sites through in situ reverse transcription
Author:
Funder
U.S. Department of Health ; Human Services | NIH | National Human Genome Research Institute
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Molecular Biology,Biochemistry,Biotechnology
Link
https://www.nature.com/articles/s41592-023-02147-9.pdf
Reference5 articles.
1. Gerstberger, S., Hafner, M. & Tuschl, T. A census of human RNA-binding proteins. Nat. Rev. Genet. 15, 829–845 (2014). This review summarizes the characteristics of human RBPs and their functions in RNA metabolism.
2. Ule, J. et al. CLIP identifies nova-regulated RNA networks in the brain. Science 302, 1212–1215 (2003). This paper presents the identification of RBP binding sites using UV-light CLIP.
3. Hafner, M. et al. CLIP and complementary methods. Nat. Rev. Methods Primers 1, 20 (2021). This review summarizes CLIP and complementary methods for studying RBP–RNA interactions, and highlights their distinctive features and strategies for data analysis.
4. Van Nostrand, E. L. et al. A large-scale binding and functional map of human RNA-binding proteins. Nature 583, 711–719 (2020). This paper reports the RNA binding maps of 150 human RBPs using enhanced CLIP (eCLIP) assays.
5. McMahon, A. C. et al. TRIBE: hijacking an RNA-editing enzyme to identify cell-specific targets of RNA-binding proteins. Cell 165, 742–753 (2016). This paper reports the detection of RBP targets using RNA-editing enzymes.
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