WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

Author:

Bouyssié David12ORCID,Altıner Pınar1,Capella-Gutierrez Salvador3,Fernández José M.3ORCID,Hagemeijer Yanick Paco45ORCID,Horvatovich Peter4ORCID,Hubálek Martin6ORCID,Levander Fredrik7ORCID,Mauri Pierluigi8,Palmblad Magnus9ORCID,Raffelsberger Wolfgang10,Rodríguez-Navas Laura3,Di Silvestre Dario8,Kunkli Balázs Tibor11ORCID,Uszkoreit Julian121314ORCID,Vandenbrouck Yves215ORCID,Vizcaíno Juan Antonio16ORCID,Winkelhardt Dirk14ORCID,Schwämmle Veit17ORCID

Affiliation:

1. Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III─Paul Sabatier (UT3), 31062 Toulouse, France

2. Proteomics French Infrastructure, ProFI, FR 2048 Toulouse, France

3. Life Sciences Department, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain

4. Department of Analytical Biochemistry, University of Groningen, Groningen Research Institute of Pharmacy, 9712 CP Groningen, The Netherlands

5. European Research Institute for the Biology of Ageing, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands

6. Institute of Organic Chemistry and Biochemistry, CAS, 160 00 Prague, Czech Republic

7. National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory, Department of Immunotechnology, Lund University, 22100 Lund, Sweden

8. Institute for Biomedical Technologies (ITB), Department of Biomedical Sciences, National Research Council (CNR), Segrate, 20054 Milan, Italy

9. Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands

10. Wolfgang Raffelsberger: Institut de Génétique et de Biologie Moléculaire et Cellulaire, Université de Strasbourg, CNRS UMR7104, INSERM U1258, Illkirch, 1 Rue Laurent Fries, 67404 Illkirch, France

11. Balázs Tibor Kunkli: Department of Biochemistry and Molecular Biology, University of Debrecen, 4032 Debrecen, Hungary

12. Medical Faculty, Medical Bioinformatics, Ruhr University Bochum, 44801 Bochum, Germany

13. Center for Protein Diagnostics (ProDi), Medical Proteome Analysis, Ruhr University Bochum, 44801 Bochum, Germany

14. Medical Faculty, Medizinisches Proteom-Center, Ruhr University Bochum, 44801 Bochum, Germany

15. CEA, Fundamental Research Division, Proteomics French Infrastructure, 91191 Gif-sur-Yvette, France

16. European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI), Wellcome Trust, Genome Campus, Hinxton, Cambridge CB10 1SD, U.K.

17. Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark

Funder

Agence Nationale de la Recherche

Biotechnology and Biological Sciences Research Council

ELIXIR

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

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