1. Centre for Infectious Disease Epidemiology and Research, School of Public Health, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
2. Division of Public Health Medicine, School of Public Health, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
3. Centre for Infectious Diseases Research in Africa, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
4. Health Intelligence, Western Cape Department of Health and Wellness, Cape Town 8000, South Africa
5. Division of Health Systems and Public Health, Department of Global Health, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg 7505, South Africa
6. Metro Health Services, Western Cape Department of Health and Wellness, Cape Town 8000, South Africa
7. Rural Health Services, Western Cape Department of Health and Wellness, Cape Town 8000, South Africa
8. School of Public Health, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
9. Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg 2192, South Africa
10. School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2193, South Africa
11. Centre for Tuberculosis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg 2192, South Africa
12. KwaZulu-Natal Research Innovation & Sequencing Platform, University of KwaZulu-Natal, Durban 4001, South Africa
13. Emergency & Clinical Services Support, Western Cape Department of Health and Wellness, Cape Town 8000, South Africa
14. School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2193, South Africa
15. Health Practice, Genesis Analytics, Johannesburg 2196, South Africa
16. Division of Public Health Surveillance and Response, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg 2192, South Africa
17. Division of Epidemiology and Biostatistics, School of Public Health, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
18. Department of Immunizations, Vaccines, and Biologicals, World Health Organization, CH-1211 Geneva, Switzerland
19. Western Cape Department of Health and Wellness, Cape Town 8000, South Africa