Active Semi-Supervised Learning via Bayesian Experimental Design for Lung Cancer Classification Using Low Dose Computed Tomography Scans

Author:

Nguyen Phuong12,Rathod Ankita3,Chapman David12,Prathapan Smriti1,Menon Sumeet1,Morris Michael145,Yesha Yelena126

Affiliation:

1. Institute for Data Science and Computing, University of Miami, Coral Gables, FL 33146, USA

2. Department of Computer Science, University of Miami, Coral Gables, FL 33124, USA

3. Department of Computer Science and Electrical Engineering, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD 21250, USA

4. National Institutes of Health Clinical Center, 10 Center Dr, Bethesda, MD 20892, USA

5. Networking Health, Glen Burnie, MD 21061, USA

6. Department of Radiology, University of Miami, Coral Gables, FL 33124, USA

Abstract

We introduce an active, semisupervised algorithm that utilizes Bayesian experimental design to address the shortage of annotated images required to train and validate Artificial Intelligence (AI) models for lung cancer screening with computed tomography (CT) scans. Our approach incorporates active learning with semisupervised expectation maximization to emulate the human in the loop for additional ground truth labels to train, evaluate, and update the neural network models. Bayesian experimental design is used to intelligently identify which unlabeled samples need ground truth labels to enhance the model’s performance. We evaluate the proposed Active Semi-supervised Expectation Maximization for Computer aided diagnosis (CAD) tasks (ASEM-CAD) using three public CT scans datasets: the National Lung Screening Trial (NLST), the Lung Image Database Consortium (LIDC), and Kaggle Data Science Bowl 2017 for lung cancer classification using CT scans. ASEM-CAD can accurately classify suspicious lung nodules and lung cancer cases with an area under the curve (AUC) of 0.94 (Kaggle), 0.95 (NLST), and 0.88 (LIDC) with significantly fewer labeled images compared to a fully supervised model. This study addresses one of the significant challenges in early lung cancer screenings using low-dose computed tomography (LDCT) scans and is a valuable contribution towards the development and validation of deep learning algorithms for lung cancer screening and other diagnostic radiology examinations.

Funder

NSF IUCRC Center for Accelerated Real Time Analytics

Publisher

MDPI AG

Subject

Fluid Flow and Transfer Processes,Computer Science Applications,Process Chemistry and Technology,General Engineering,Instrumentation,General Materials Science

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