Terahertz Time-Domain Spectroscopy of Glioma Patient Blood Plasma: Diagnosis and Treatment

Author:

Cherkasova Olga12ORCID,Vrazhnov Denis34ORCID,Knyazkova Anastasia34ORCID,Konnikova Maria235ORCID,Stupak Evgeny6ORCID,Glotov Vadim6,Stupak Vyacheslav6ORCID,Nikolaev Nazar1ORCID,Paulish Andrey78,Peng Yan9ORCID,Kistenev Yury34,Shkurinov Alexander35ORCID

Affiliation:

1. Institute of Automation and Electrometry, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia

2. Institute on Laser and Information Technologies, Branch of the Federal Scientific Research Centre “Crystallography and Photonics” of RAS, 140700 Shatura, Russia

3. Laboratory of Laser Molecular Imaging and Machine Learning, Tomsk State University, 634050 Tomsk, Russia

4. V.E. Zuev Institute of Atmospheric Optics SB RAS, Academician Zuev Square, 1, 634055 Tomsk, Russia

5. Faculty of Physics, Lomonosov Moscow State University, 119991 Moscow, Russia

6. Novosibirsk Research Institute of Traumatology and Orthopedics n.a. Ya.L. Tsivyan, 630091 Novosibirsk, Russia

7. Novosibirsk Division of Rzhanov Institute of Semiconductor Physics Siberian Branch of the Russian Academy of Sciences “Technological Design Institute of Applied Microelectronics”, 630090 Novosibirsk, Russia

8. Faculty of Radio Engineering and Electronics, Novosibirsk State Technical University, Karl Marks Avenue, 20, 630073 Novosibirsk, Russia

9. Terahertz Biomedical Laboratory, University of Shanghai for Science and Technology, 516 Jungong Road, Yangpu District, Shanghai 200093, China

Abstract

Gliomas, one of the most severe malignant tumors of the central nervous system, have a high mortality rate and an increased risk of recurrence. Therefore, early glioma diagnosis and the control of treatment have great significance. The blood plasma samples of glioma patients, patients with skull craniectomy defects, and healthy donors were studied using terahertz time-domain spectroscopy (THz-TDS). An analysis of experimental THz data was performed by machine learning (ML). The ML pipeline included (i) THz spectra smoothing using the Savitzky–Golay filter, (ii) dimension reduction with principal component analysis and t-distribution stochastic neighborhood embedding methods; (iii) data separability analyzed using Support Vector Machine (SVM), Random Forest (RF), and Extreme Gradient Boosting (XGBoost). The ML models’ performance was evaluated by a k-fold cross validation technique using ROC-AUC, sensitivity, and specificity metrics. It was shown that tree-based ensemble methods work more accurately than SVM. RF and XGBoost provided a better differentiation of the group of patients with glioma from healthy donors and patients with skull craniectomy defects. THz-TDS combined with ML was shown to make it possible to separate the blood plasma of patients before and after tumor removal surgery (AUC = 0.92). Thus, the applicability of THz-TDS and ML for the diagnosis of glioma and treatment monitoring has been shown.

Funder

the Ministry of Science and Higher Education of the Russian Federation

a grant under the Decree of the Government of the Russian Federation

Publisher

MDPI AG

Subject

Fluid Flow and Transfer Processes,Computer Science Applications,Process Chemistry and Technology,General Engineering,Instrumentation,General Materials Science

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