Prediction of neuropathologic lesions from clinical data

Author:

Phongpreecha Thanaphong123ORCID,Cholerton Brenna1,Bukhari Syed1,Chang Alan L.234,De Francesco Davide234,Thuraiappah Melan234,Godrich Dana5,Perna Amalia1,Becker Martin G.234,Ravindra Neal G.234,Espinosa Camilo234,Kim Yeasul234,Berson Eloise134,Mataraso Samson234,Sha Sharon J.6,Fox Edward J.1,Montine Kathleen S.1,Baker Laura D.7,Craft Suzanne7,White Lon8,Poston Kathleen L.6,Beecham Gary5,Aghaeepour Nima234,Montine Thomas J.1

Affiliation:

1. Department of Pathology Stanford University Stanford California USA

2. Department of Anesthesiology, Perioperative, and Pain Medicine Stanford University Stanford California USA

3. Department of Biomedical Data Science Stanford University Stanford California USA

4. Department of Pediatrics Stanford University Stanford California USA

5. Dr. John T. Macdonald Foundation Department of Human Genetics University of Miami Miami Florida USA

6. Department of Neurology & Neurological Sciences Stanford University Stanford California USA

7. Department of Gerontology and Geriatric Medicine Wake Forest University School of Medicine North Carolina USA

8. Pacific Health Research and Education Institute Honolulu Hawaii USA

Abstract

AbstractINTRODUCTIONPost‐mortem analysis provides definitive diagnoses of neurodegenerative diseases; however, only a few can be diagnosed during life.METHODSThis study employed statistical tools and machine learning to predict 17 neuropathologic lesions from a cohort of 6518 individuals using 381 clinical features (Table S1). The multisite data allowed validation of the model's robustness by splitting train/test sets by clinical sites. A similar study was performed for predicting Alzheimer's disease (AD) neuropathologic change without specific comorbidities.RESULTSPrediction results show high performance for certain lesions that match or exceed that of research annotation. Neurodegenerative comorbidities in addition to AD neuropathologic change resulted in compounded, but disproportionate, effects across cognitive domains as the comorbidity number increased.DISCUSSIONCertain clinical features could be strongly associated with multiple neurodegenerative diseases, others were lesion‐specific, and some were divergent between lesions. Our approach could benefit clinical research, and genetic and biomarker research by enriching cohorts for desired lesions.

Publisher

Wiley

Subject

Psychiatry and Mental health,Cellular and Molecular Neuroscience,Geriatrics and Gerontology,Neurology (clinical),Developmental Neuroscience,Health Policy,Epidemiology

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