Single‐cell profiling approaches to probing tumor heterogeneity

Author:

Khoo Bee Luan12,Chaudhuri Parthiv Kant1,Ramalingam Naveen3,Tan Daniel Shao Weng45,Lim Chwee Teck126,Warkiani Majid Ebrahimi27

Affiliation:

1. Mechanobiology Institute, National University of Singapore

2. BioSystems and Micromechanics (BioSyM) IRG Singapore‐MIT Alliance for Research and Technology (SMART) Centre Singapore

3. Fluidigm Corporation, South San Francisco CA

4. Division of Medical Oncology National Cancer Centre Singapore

5. Cancer Stem Cell Biology, Genome Institute of Singapore

6. Department of Biomedical Engineering National University of Singapore

7. School of Mechanical and Manufacturing Engineering Australian Centre for NanoMedicine, University of New South Wales Sydney NSW 2052 Australia

Abstract

Tumor heterogeneity is a major hindrance in cancer classification, diagnosis and treatment. Recent technological advances have begun to reveal the true extent of its heterogeneity. Single‐cell analysis (SCA) is emerging as an important approach to detect variations in morphology, genetic or proteomic expression. In this review, we revisit the issue of inter‐ and intra‐tumor heterogeneity, and list various modes of SCA techniques (cell‐based, nucleic acid‐based, protein‐based, metabolite‐based and lipid‐based) presently used for cancer characterization. We further discuss the advantages of SCA over pooled cell analysis, as well as the limitations of conventional techniques. Emerging trends, such as high‐throughput sequencing, are also mentioned as improved means for cancer profiling. Collectively, these applications have the potential for breakthroughs in cancer treatment.

Funder

Mechanobiology Institute (MBI)

Singapore-MIT Alliance for Research and Technology (SMART) Center (BioSyM IRG)

Publisher

Wiley

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