Diagnosis of acute myocardial infarction using a combination of circulating circular RNA cZNF292 and clinical information based on machine learning

Author:

Zhou Qiulian12,Boeckel Jes‐Niels34,Yao Jianhua56,Zhao Juan127,Bai Yuzheng1,Lv Yicheng1,Hu Meiyu1,Meng Danni1,Xie Yuan8,Yu Pujiao8,Xi Peng8,Xu Jiahong8,Zhang Yi5,Dimmeler Stefanie3,Xiao Junjie12

Affiliation:

1. Institute of Geriatrics (Shanghai University) Affiliated Nantong Hospital of Shanghai University (The Sixth People's Hospital of Nantong) and School of Life Science Shanghai University Nantong China

2. Cardiac Regeneration and Ageing Lab Institute of Cardiovascular Sciences Shanghai Engineering Research Center of Organ Repair, School of Medicine Shanghai University Shanghai China

3. Institute for Cardiovascular Regeneration University Frankfurt Frankfurt Germany

4. Klinik und Poliklinik für Kardiologie Universitätsklinikum Leipzig Leipzig Germany

5. Department of Cardiology Shanghai Tenth People's Hospital Tongji University School of Medicine Shanghai China

6. Department of Cardiology Shigatse People's Hospital Tibet China

7. School of Pharmacy Shanghai University of Traditional Chinese Medicine Shanghai China

8. Department of Cardiology Tongji Hospital Tongji University School of Medicine Shanghai China

Abstract

AbstractCirculating circular RNAs (circRNAs) are emerging as novel biomarkers for cardiovascular diseases (CVDs). Machine learning can provide optimal predictions on the diagnosis of diseases. Here we performed a proof‐of‐concept study to determine if combining circRNAs with an artificial intelligence approach works in diagnosing CVD. We used acute myocardial infarction (AMI) as a model setup to prove the claim. We determined the expression level of five hypoxia‐induced circRNAs, including cZNF292, cAFF1, cDENND4C, cTHSD1, and cSRSF4, in the whole blood of coronary angiography positive AMI and negative non‐AMI patients. Based on feature selection by using lasso with 10‐fold cross validation, prediction model by logistic regression, and ROC curve analysis, we found that cZNF292 combined with clinical information (CM), including age, gender, body mass index, heart rate, and diastolic blood pressure, can predict AMI effectively. In a validation cohort, CM + cZNF292 can separate AMI and non‐AMI patients, unstable angina and AMI patients, acute coronary syndromes (ACS), and non‐ACS patients. RNA stability study demonstrated that cZNF292 was stable. Knockdown of cZNF292 in endothelial cells or cardiomyocytes showed anti‐apoptosis effects in oxygen glucose deprivation/reoxygenation. Thus, we identify circulating cZNF292 as a potential biomarker for AMI and construct a prediction model “CM + cZNF292.”

Funder

National Natural Science Foundation of China

Science and Technology Commission of Shanghai Municipality

Natural Science Foundation of Tibet Autonomous Region

Natural Science Foundation of Shanghai

Deutsche Forschungsgemeinschaft

Publisher

Wiley

Subject

Cell Biology,Biochemistry (medical),Genetics (clinical),Computer Science Applications,Drug Discovery,Genetics,Oncology,Immunology and Allergy

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