Dealing with paralogy in RAD seq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.-Reference-Cited by-同舟云学术

Dealing with paralogy in RAD seq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.

Published:2016-09-22 Issue:20 Volume:6 Page:7323-7333
ISSN:2045-7758
Container-title:Ecology and Evolution
language:en
Short-container-title:Ecol Evol

Author:

Verdu Cindy F.¹,Guichoux Erwan²,Quevauvillers Samuel¹,De Thier Olivier¹,Laizet Yec'han²,Delcamp Adline²,Gévaudant Frédéric³,Monty Arnaud⁴,Porté Annabel J.²,Lejeune Philippe¹,Lassois Ludivine¹⁴,Mariette Stéphanie²

Affiliation:

1. Forest Management Unit Gembloux Agro‐Bio Tech University of Liège Gembloux Belgium

2. Biogeco INRA University of Bordeaux Cestas France

3. BFP INRA University of Bordeaux Villenave d'Ornon France

4. Biodiversity and Landscape Unit Gembloux Agro‐Bio Tech University of Liège Gembloux Belgium

Funder

Agence Nationale de la Recherche

Université de Liège

Seventh Framework Programme

Publisher

Wiley

Subject

Nature and Landscape Conservation,Ecology,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.2466

Reference49 articles.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2. Andrews S.(2015).FastQC a quality control tool for high throughput sequence data. Available online:http://www.bioinformatics.babraham.ac.uk/projects/fastqc

3. Harnessing the power of RADseq for ecological and evolutionary genomics

4. RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

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