Stability strengths and weaknesses in protein structures detected by statistical potentials: Application to bovine seminal ribonuclease-Reference-Cited by-同舟云学术

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Stability strengths and weaknesses in protein structures detected by statistical potentials: Application to bovine seminal ribonuclease

Published:2015-12-09 Issue:1 Volume:84 Page:143-158
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

De Laet Marie¹,Gilis Dimitri¹,Rooman Marianne¹

Affiliation:

1. 3BIO-BioInfo Department; Université Libre De Bruxelles; Avenue F. Roosevelt 50 CP 165/61 Brussels 1050 Belgium

Funder

Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference66 articles.

1. Structural and functional constraints in the evolution of protein families;Worth;Nat Rev Mol Cell Biol,2009

2. Weak selection and protein evolution;Akashi;Genetics,2012

3. Sequence-structure signals of 3D domain swapping in proteins;Dehouck;J Mol Biol,2003

4. Prelude and Fugue, predicting local protein structure, early folding regions and structural weaknesses;Kwasigroch;Bioinformatics,2006

5. PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality;Dehouck;BMC Bioinformatics,2011

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2. Enzyme Stability-Activity Trade-Off: New Insights from Protein Stability Weaknesses and Evolutionary Conservation;Journal of Chemical Theory and Computation;2023-06-05

3. Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes;Viruses;2023-05-10

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5. Coarse-Grained Molecular Simulations and Ensemble-Based Mutational Profiling of Protein Stability in the Different Functional Forms of the SARS-CoV-2 Spike Trimers: Balancing Stability and Adaptability in BA.1, BA.2 and BA.2.75 Variants;International Journal of Molecular Sciences;2023-04-02

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