Efficient Variant Calling on Human Genome Sequences Using a GPU-Enabled Commodity Cluster

Author:

Das Manas Jyoti1ORCID,Shehzad Khawar1ORCID,Rao Praveen1ORCID

Affiliation:

1. University of Missouri, Columbia, MO, USA

Funder

National Science Foundation

Publisher

ACM

Reference60 articles.

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2. BigBWA: approaching the Burrows–Wheeler aligner to Big Data technologies

3. J. M. Abuin J. C. Pichel T. F. Pena and J. Amigo. 2016. SparkBWA: Speeding up the Alignment of High-Throughput DNA Sequencing Data. PLoS ONE 11 5 (2016). J. M. Abuin J. C. Pichel T. F. Pena and J. Amigo. 2016. SparkBWA: Speeding up the Alignment of High-Throughput DNA Sequencing Data. PLoS ONE 11 5 (2016).

4. Nauman Ahmed , Vlad-Mihai Sima , Ernst Houtgast , Koen Bertels , and Zaid Al-Ars . 2015 . Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm. In 2015 IEEE/ACM International Conference on Computer-Aided Design (ICCAD). IEEE, 240--246 . Nauman Ahmed, Vlad-Mihai Sima, Ernst Houtgast, Koen Bertels, and Zaid Al-Ars. 2015. Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm. In 2015 IEEE/ACM International Conference on Computer-Aided Design (ICCAD). IEEE, 240--246.

5. Adam Auton and et.al. 2015. A Global Reference for Human Genetic Variation. Nature 526, 7571 ( 2015 ), 68--74. Adam Auton and et.al. 2015. A Global Reference for Human Genetic Variation. Nature 526, 7571 (2015), 68--74.

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