Application of Genomic Sequencing to Refine Patient Stratification for Adjuvant Therapy in Renal Cell Carcinoma

Author:

Vasudev Naveen S.1ORCID,Scelo Ghislaine2ORCID,Glennon Kate I.34ORCID,Wilson Michelle1ORCID,Letourneau Louis3ORCID,Eveleigh Robert3ORCID,Nourbehesht Nazanin34ORCID,Arseneault Madeleine3ORCID,Paccard Antoine3ORCID,Egevad Lars5ORCID,Viksna Juris6ORCID,Celms Edgars6ORCID,Jackson Sharon M.1ORCID,Abedi-Ardekani Behnoush2ORCID,Warren Anne Y.7ORCID,Selby Peter J.1ORCID,Trainor Sebastian1ORCID,Kimuli Michael8ORCID,Cartledge Jon8ORCID,Soomro Naeem9ORCID,Adeyoju Adebanji10ORCID,Patel Poulam M.11ORCID,Wozniak Magdalena B.2ORCID,Holcatova Ivana12ORCID,Brisuda Antonin13ORCID,Janout Vladimir14ORCID,Chanudet Estelle2ORCID,Zaridze David15ORCID,Moukeria Anush15ORCID,Shangina Oxana15ORCID,Foretova Lenka16ORCID,Navratilova Marie16ORCID,Mates Dana17ORCID,Jinga Viorel18ORCID,Bogdanovic Ljiljana19ORCID,Kovacevic Bozidar20ORCID,Cambon-Thomsen Anne21ORCID,Bourque Guillaume34ORCID,Brazma Alvis22ORCID,Tost Jörg23ORCID,Brennan Paul2ORCID,Lathrop Mark34ORCID,Riazalhosseini Yasser34ORCID,Banks Rosamonde E.1ORCID

Affiliation:

1. 1Leeds Institute of Medical Research at St James's, University of Leeds, St James's University Hospital, Leeds, United Kingdom.

2. 2World Health Organisation (WHO), International Agency for Research on Cancer (IARC), The Genomic Epidemiology Branch, Lyon, France.

3. 3Victor Philip Dahdaleh Institute of Genomic Medicine at McGill University, Montreal, Québec, Canada.

4. 4Department of Human Genetics, McGill University, Montreal, Québec, Canada.

5. 5Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.

6. 6Institute of Mathematics and Computer Science, University of Latvia, Riga, Latvia.

7. 7Department of Histopathology, Cambridge University Hospitals NHS Foundation Trust, Hills Road, Cambridge, United Kingdom.

8. 8Pyrah Department of Urology, Leeds Teaching Hospitals NHS Trust, Lincoln Wing, St James's University Hospital, Leeds, United Kingdom.

9. 9Newcastle Upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom.

10. 10Stockport NHS Foundation Trust, Stockport, United Kingdom.

11. 11Division of Cancer & Stem Cells, School of Medicine, University of Nottingham, Nottingham, United Kingdom.

12. 12Charles University in Prague, First Faculty of Medicine, Institute of Hygiene and Epidemiology, Prague, Czech Republic.

13. 13University Hospital Motol, Prague, Czech Republic.

14. 14Faculty of Health Sciences, Palacky University, Olomouc, Czech Republic.

15. 15N.N. Blokhin National Medical Research Centre of Oncology, Moscow, Russian Federation.

16. 16Department of Cancer Epidemiology and Genetics, Masaryk Memorial Cancer Institute, Brno, Czech Republic.

17. 17National Institute of Public Health, Bucuresti, Romania.

18. 18Carol Davila University of Medicine and Pharmacy, Prof. Dr. Th. Burghele Clinical Hospital, Bucharest, Romania.

19. 19Institute of Pathology, School of Medicine Belgrade, University of Belgrade, Belgrade, Serbia.

20. 20Institute of Pathology and Forensic Medicine, Military Medical Academy, Belgrade, Serbia.

21. 21Institut National de la Santé et de la Recherche Médicale (INSERM) and Université Toulouse III Paul Sabatier (UPS), Toulouse, France.

22. 22European Bioinformatics Institute, European Molecular Biology Laboratory, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, United Kingdom.

23. 23Centre National de Recherche en Génomique Humaine, CEA - Institut de Biologie Francois Jacob, University Paris Saclay, Evry, France.

Abstract

AbstractPurpose:Patients with resected localized clear-cell renal cell carcinoma (ccRCC) remain at variable risk of recurrence. Incorporation of biomarkers may refine risk prediction and inform adjuvant treatment decisions. We explored the role of tumor genomics in this setting, leveraging the largest cohort to date of localized ccRCC tissues subjected to targeted gene sequencing.Experimental Design:The somatic mutation status of 12 genes was determined in 943 ccRCC cases from a multinational cohort of patients, and associations to outcomes were examined in a Discovery (n = 469) and Validation (n = 474) framework.Results:Tumors containing a von-Hippel Lindau (VHL) mutation alone were associated with significantly improved outcomes in comparison with tumors containing a VHL plus additional mutations. Within the Discovery cohort, those with VHL+0, VHL+1, VHL+2, and VHL+≥3 tumors had disease-free survival (DFS) rates of 90.8%, 80.1%, 68.2%, and 50.7% respectively, at 5 years. This trend was replicated in the Validation cohort. Notably, these genomically defined groups were independent of tumor mutational burden. Amongst patients eligible for adjuvant therapy, those with a VHL+0 tumor (29%) had a 5-year DFS rate of 79.3% and could, therefore, potentially be spared further treatment. Conversely, patients with VHL+2 and VHL+≥3 tumors (32%) had equivalent DFS rates of 45.6% and 35.3%, respectively, and should be prioritized for adjuvant therapy.Conclusions:Genomic characterization of ccRCC identified biologically distinct groups of patients with divergent relapse rates. These groups account for the ∼80% of cases with VHL mutations and could be used to personalize adjuvant treatment discussions with patients as well as inform future adjuvant trial design.

Funder

European Commission

Ministère de l'Éducation et de l'Enseignement supérieur

Cancer Research Society

Publisher

American Association for Cancer Research (AACR)

Subject

Cancer Research,Oncology

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