Technologies, strategies, and cautions when deconvoluting genome‐wide association signals: FTO in focus

Author:

Pahl Matthew C.12,Grant Struan F. A.12345,Leibel Rudolph L.67,Stratigopoulos George67ORCID

Affiliation:

1. Center for Spatial and Functional Genomics Children's Hospital of Philadelphia Philadelphia Pennsylvania USA

2. Division of Human Genetics Children's Hospital of Philadelphia Philadelphia Pennsylvania USA

3. Division of Diabetes and Endocrinology Children's Hospital of Philadelphia Philadelphia Pennsylvania USA

4. Department of Pediatrics The University of Pennsylvania Perelman School of Medicine Philadelphia Pennsylvania USA

5. Department of Genetics University of Pennsylvania Philadelphia Pennsylvania USA

6. Department of Pediatrics, College of Physicians and Surgeons Columbia University New York New York USA

7. Naomi Berrie Diabetes Center Columbia University Medical Center New York New York USA

Abstract

SummaryGenome‐wide association studies have revealed a plethora of genetic variants that correlate with polygenic conditions. However, causal molecular mechanisms have proven challenging to fully define. Without such information, the associations are not physiologically useful or clinically actionable. By reviewing studies of the FTO locus in the genetic etiology of obesity, we wish to highlight advances in the field fueled by the evolution of technical and analytic strategies in assessing the molecular bases for genetic associations. Particular attention is drawn to extrapolating experimental findings from animal models and cell types to humans, as well as technical aspects used to identify long‐range DNA interactions and their biological relevance with regard to the associated trait. A unifying model is proposed by which independent obesogenic pathways regulated by multiple FTO variants and genes are integrated at the primary cilium, a cellular antenna where signaling molecules that control energy balance convene.

Funder

National Institute of Diabetes and Digestive and Kidney Diseases

Publisher

Wiley

Subject

Public Health, Environmental and Occupational Health,Endocrinology, Diabetes and Metabolism

Reference229 articles.

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