Targeted isolation based on metagenome‐assembled genomes reveals a phylogenetically distinct group of thermophilic spirochetes from deep biosphere-Reference-Cited by-同舟云学术

Targeted isolation based on metagenome‐assembled genomes reveals a phylogenetically distinct group of thermophilic spirochetes from deep biosphere

Published:2020-09-15 Issue:7 Volume:23 Page:3585-3598
ISSN:1462-2912
Container-title:Environmental Microbiology
language:en
Short-container-title:Environ Microbiol

Author:

Karnachuk Olga V.¹,Lukina Anastasia P.¹,Kadnikov Vitaly V.²,Sherbakova Viktoria A.³,Beletsky Alexey V.²,Mardanov Andrey V.²,Ravin Nikolai V.²^ORCID

Affiliation:

1. Tomsk State University Tomsk 634050 Russia

2. Institute of Bioengineering Research Center of Biotechnology of the Russian Academy of Sciences Moscow 119071 Russia

3. Skryabin Institute of Biochemistry and Physiology of Microorganisms Federal Research Center ‘Pushchino Scientific Center for Biological Research, Russian Academy of Sciences’ Pushchino Moscow 142290 Russia

Funder

Russian Science Foundation

Publisher

Wiley

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15218

Reference57 articles.

1. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

2. Spirochaeta thermophila sp. nov., an Obligately Anaerobic, Polysaccharolytic, Extremely Thermophilic Bacterium

3. Binning metagenomic contigs by coverage and composition

4. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

5. In situ cultivation of previously uncultivable microorganisms using the ichip

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