Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities-Reference-Cited by-同舟云学术

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Published:2013-09-18 Issue:9 Volume:16 Page:2659-2671
ISSN:1462-2912
Container-title:Environmental Microbiology
language:en
Short-container-title:Environ Microbiol

Author:

Logares Ramiro¹,Sunagawa Shinichi²,Salazar Guillem¹,Cornejo-Castillo Francisco M.¹,Ferrera Isabel¹,Sarmento Hugo¹³,Hingamp Pascal⁴,Ogata Hiroyuki⁴⁵,de Vargas Colomban⁶,Lima-Mendez Gipsi⁷⁸,Raes Jeroen⁷⁸,Poulain Julie⁹,Jaillon Olivier⁹¹⁰¹¹,Wincker Patrick⁹¹⁰¹¹,Kandels-Lewis Stefanie²,Karsenti Eric²,Bork Peer²,Acinas Silvia G.¹

Affiliation:

1. Department of Marine Biology and Oceanography; Institute of Marine Science (ICM); Spanish National Research Council (CSIC); Passeig Marítim de la Barceloneta, 37-49 Barcelona ES-08003 Spain

2. European Molecular Biology Laboratory; Meyerhofstr. 1 Heidelberg 69117 Germany

3. Department of Oceanography and Limnology; Federal University of Rio Grande do Norte; Natal 59014-002 Brazil

4. Information Génomique et Structurale; Centre National de la Recherche Scientifique; Aix-Marseille Université; Institut de Microbiologie de la Méditerranée; 163 Avenue de Luminy Marseille 13288 France

5. Education Academy of Computational Life Sciences; Tokyo Institute of Technology; 12-1, Ookayama, Meguro-ku Tokyo 152-8552 Japan

6. Centre National de la Recherche Scientifique; Université Pierre et Marie Curie; Unité Mixte de Recherche 7144; Station Biologique de Roscoff Roscoff FR-29682 France

7. Research Group of Bioinformatics and (Eco-)Systems biology; Department of Structural Biology; Vlaams Institut voor Biotechnologie; Pleinlaan 2 Brussels 1050 Belgium

8. Research Group of Bioinformatics and (Eco-)Systems biology; Microbiology Unit (MICR); Department of Applied Biological Sciences (DBIT); Vrije Universiteit Brussel; Pleinlaan 2 Brussels 1050 Belgium

9. Genoscope; Institut de Génomique; Commissariat á L'Energie Atomique; 2 rue Gaston Crémieux Evry 91057 France

10. Centre National de la Recherche Scientifique; - Unité Mixte de Recherche 8030; 2 rue Gaston Crémieux Evry 91057 France

11. Université d'Evry; boulevard François Mitterrand Evry 91025 France

Publisher

Wiley

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.12250/fullpdf

Reference49 articles.

1. PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample;Acinas;Appl Environ Microbiol,2005

2. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries;Aird;Genome biol,2011