Discovery of RNA secondary structural motifs using sequence-ordered thermodynamic stability and comparative sequence analysis-Reference-Cited by-同舟云学术

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Discovery of RNA secondary structural motifs using sequence-ordered thermodynamic stability and comparative sequence analysis

Published:2023-12 Issue: Volume:11 Page:102275
ISSN:2215-0161
Container-title:MethodsX
language:en
Short-container-title:MethodsX

Author:

Peterson Jake M.,O'Leary Collin A.,Coppenbarger Evelyn C.,Tompkins Van S.,Moss Walter N.

Funder

National Institute of General Medical Sciences

National Institutes of Health

Publisher

Elsevier BV

Subject

Medical Laboratory Technology,Clinical Biochemistry

Reference38 articles.

1. ScanFold: an approach for genome-wide discovery of local RNA structural elements-applications to Zika virus and HIV;Andrews;Peer J,2018

2. ViennaRNA Package 2.0;Lorenz;Algorithms Mol. Biol.,2011

3. Knotty: efficient and accurate prediction of complex RNA pseudoknot structures;Jabbari;Bioinformatics,2018

4. A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures;Jabbari;BMC Bioinf.,2014

5. RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications;Incarnato;Nucleic Acids Res.,2018

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1. Structure of the SARS-CoV-2 Frameshift Stimulatory Element with an Upstream Multibranch Loop;Biochemistry;2024-05-10

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