VisualZoneR: A computational protocol to identify compartmental zones from single-cell spatial transcriptomics using R-Reference-Cited by-同舟云学术

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VisualZoneR: A computational protocol to identify compartmental zones from single-cell spatial transcriptomics using R

Published:2024-09 Issue:3 Volume:5 Page:103196
ISSN:2666-1667
Container-title:STAR Protocols
language:en
Short-container-title:STAR Protocols

Author:

Kerzel Thomas,Beretta Stefano,Naldini Luigi,Squadrito Mario Leonardo^ORCID

Publisher

Elsevier BV

Reference5 articles.

1. Understanding the tumor immune microenvironment (TIME) for effective therapy;Binnewies;Nat. Med.,2018

2. Spatial immunoprofiling of the intratumoral and peritumoral tissue of renal cell carcinoma patients;Bruck;Mod. Pathol.,2021

3. Revealing and harnessing CD39 for the treatment of colorectal cancer and liver metastases by engineered T cells;Potenza;Gut,2023

4. Breast tumor microenvironment structures are associated with genomic features and clinical outcome;Danenberg;Nat. Genet.,2022

5. In vivo macrophage engineering reshapes the tumor microenvironment leading to eradication of liver metastases;Kerzel;Cancer Cell,2023

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